miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 5' -61.3 NC_006560.1 + 66 0.67 0.655512
Target:  5'- uGGGGCG-GGUCCgGGCGggcccuccCCGCGCCcCGc -3'
miRNA:   3'- -CCUCGUgCCAGG-CUGC--------GGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 527 0.68 0.577337
Target:  5'- gGGGGCgGCGG-CCG--GCCGCGCCcCGg -3'
miRNA:   3'- -CCUCG-UGCCaGGCugCGGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 1220 0.66 0.694407
Target:  5'- gGGGGCGgGG-CCccUGCCGCGCCc-- -3'
miRNA:   3'- -CCUCGUgCCaGGcuGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 1976 0.67 0.66528
Target:  5'- gGGGGCGgGGcUCGGgGCCGgGCCa-- -3'
miRNA:   3'- -CCUCGUgCCaGGCUgCGGCgCGGagu -5'
31214 5' -61.3 NC_006560.1 + 2268 0.66 0.694407
Target:  5'- -aGGCGCGGUgCGA-G-UGCGCCUCGc -3'
miRNA:   3'- ccUCGUGCCAgGCUgCgGCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 2304 0.66 0.723105
Target:  5'- cGGGCGCG--CCGGCGgCGgcCGCCUCGc -3'
miRNA:   3'- cCUCGUGCcaGGCUGCgGC--GCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 2358 0.69 0.529426
Target:  5'- cGAGCGCGGgcagCaCGGCGCgGCGguaCUCGc -3'
miRNA:   3'- cCUCGUGCCa---G-GCUGCGgCGCg--GAGU- -5'
31214 5' -61.3 NC_006560.1 + 2783 0.67 0.655512
Target:  5'- aGGAGCACGccCUGcGCGCCcaGCGCCg-- -3'
miRNA:   3'- -CCUCGUGCcaGGC-UGCGG--CGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 2819 0.66 0.704032
Target:  5'- gGGGGCcCGGUCCaGuuGCCG-GCC-CAg -3'
miRNA:   3'- -CCUCGuGCCAGG-CugCGGCgCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 2929 0.68 0.587048
Target:  5'- cGGGGCGgGGga-GACGCCGCcgagcuCCUCGc -3'
miRNA:   3'- -CCUCGUgCCaggCUGCGGCGc-----GGAGU- -5'
31214 5' -61.3 NC_006560.1 + 3329 0.67 0.616339
Target:  5'- gGGGGCGCGGgcgggCGGCGUCG-GCgUCGg -3'
miRNA:   3'- -CCUCGUGCCag---GCUGCGGCgCGgAGU- -5'
31214 5' -61.3 NC_006560.1 + 3758 0.72 0.380786
Target:  5'- cGGGCGCGG--CGGCGCCGCGCggCGg -3'
miRNA:   3'- cCUCGUGCCagGCUGCGGCGCGgaGU- -5'
31214 5' -61.3 NC_006560.1 + 4041 0.67 0.626133
Target:  5'- cGGGGCgGCGG-CgCGGCGCCG-GCCg-- -3'
miRNA:   3'- -CCUCG-UGCCaG-GCUGCGGCgCGGagu -5'
31214 5' -61.3 NC_006560.1 + 4300 0.66 0.7136
Target:  5'- -aGGCGCGGUCCagcuccACGUCGCcgGCCgUCAc -3'
miRNA:   3'- ccUCGUGCCAGGc-----UGCGGCG--CGG-AGU- -5'
31214 5' -61.3 NC_006560.1 + 4438 0.72 0.372157
Target:  5'- cGGGCGCGGgcgcgCCGGCgGCCucguagcgccggcGCGCCUCc -3'
miRNA:   3'- cCUCGUGCCa----GGCUG-CGG-------------CGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 4641 0.71 0.396813
Target:  5'- aGGGGCACGGgCCG-CgGCCGCGCg--- -3'
miRNA:   3'- -CCUCGUGCCaGGCuG-CGGCGCGgagu -5'
31214 5' -61.3 NC_006560.1 + 4958 0.67 0.645726
Target:  5'- cGAGcCGgGGUCCGAguCCGaCGCCUCc -3'
miRNA:   3'- cCUC-GUgCCAGGCUgcGGC-GCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 5002 0.67 0.655512
Target:  5'- gGGGGCGgGGUgcCCGuCGCCGCcgucguCCUCc -3'
miRNA:   3'- -CCUCGUgCCA--GGCuGCGGCGc-----GGAGu -5'
31214 5' -61.3 NC_006560.1 + 5672 0.74 0.294027
Target:  5'- cGGGGCGCGGgggcggCCGGCGgCGcCGCCcgUCGa -3'
miRNA:   3'- -CCUCGUGCCa-----GGCUGCgGC-GCGG--AGU- -5'
31214 5' -61.3 NC_006560.1 + 6102 0.67 0.645726
Target:  5'- aGGGCGCcGcgCCGcCGCCGC-CCUCAc -3'
miRNA:   3'- cCUCGUGcCa-GGCuGCGGCGcGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.