miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 5' -61.3 NC_006560.1 + 8930 0.66 0.726887
Target:  5'- cGGGGCGCGGggggcuuuuaugcgCCGcgggGCGCCGaCGUCa-- -3'
miRNA:   3'- -CCUCGUGCCa-------------GGC----UGCGGC-GCGGagu -5'
31214 5' -61.3 NC_006560.1 + 23143 0.76 0.208244
Target:  5'- -cGGCACGGUCgCGcGCGCCGUGCCgCAc -3'
miRNA:   3'- ccUCGUGCCAG-GC-UGCGGCGCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 15273 0.76 0.212717
Target:  5'- gGGGGCGCGGUcgcgggagCCGGCGCgGCggcggugGCCUCGg -3'
miRNA:   3'- -CCUCGUGCCA--------GGCUGCGgCG-------CGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 142298 0.76 0.223474
Target:  5'- cGGGCGCGG-CCGGCGCCG-GCCg-- -3'
miRNA:   3'- cCUCGUGCCaGGCUGCGGCgCGGagu -5'
31214 5' -61.3 NC_006560.1 + 48098 0.75 0.239641
Target:  5'- gGGGGCGCGGagcuucCCGACGCCGCgacgGCCcCGa -3'
miRNA:   3'- -CCUCGUGCCa-----GGCUGCGGCG----CGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 67756 0.75 0.245244
Target:  5'- aGAGC-CGGagCCGA-GCCGCGCCUCc -3'
miRNA:   3'- cCUCGuGCCa-GGCUgCGGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 35016 0.74 0.262105
Target:  5'- cGGGCGCccccuccGGUCCGcCGCCGCcCCUCAc -3'
miRNA:   3'- cCUCGUG-------CCAGGCuGCGGCGcGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 23326 0.74 0.262703
Target:  5'- --cGcCGCGG-CCGGCGCCGCGCCg-- -3'
miRNA:   3'- ccuC-GUGCCaGGCUGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 112641 0.74 0.274896
Target:  5'- cGAGCACGuGUUCuGCGCCcuggcGCGCCUCGu -3'
miRNA:   3'- cCUCGUGC-CAGGcUGCGG-----CGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 102570 0.76 0.193918
Target:  5'- -cAGCgccGCGGccgccgcCCGGCGCCGCGCCUCGa -3'
miRNA:   3'- ccUCG---UGCCa------GGCUGCGGCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 54670 0.77 0.189338
Target:  5'- gGGGGCGCGGcagCCGcCgGCCGCGcCCUCGu -3'
miRNA:   3'- -CCUCGUGCCa--GGCuG-CGGCGC-GGAGU- -5'
31214 5' -61.3 NC_006560.1 + 9612 0.77 0.184853
Target:  5'- cGGGGCGCGGcccCUGGgGCCGCGCCg-- -3'
miRNA:   3'- -CCUCGUGCCa--GGCUgCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 69991 0.79 0.124944
Target:  5'- uGGAGC-CGGgggCCGACGCCGcCGCCcCAc -3'
miRNA:   3'- -CCUCGuGCCa--GGCUGCGGC-GCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 67647 0.79 0.131311
Target:  5'- cGGAGC-CGGagCCGA-GCCGCGCCUCc -3'
miRNA:   3'- -CCUCGuGCCa-GGCUgCGGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 67722 0.79 0.131311
Target:  5'- cGGAGC-CGGagCCGA-GCCGCGCCUCc -3'
miRNA:   3'- -CCUCGuGCCa-GGCUgCGGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 78506 0.79 0.141424
Target:  5'- cGGGCGCGG-CCGACGCCGC-CCUg- -3'
miRNA:   3'- cCUCGUGCCaGGCUGCGGCGcGGAgu -5'
31214 5' -61.3 NC_006560.1 + 99314 0.78 0.14495
Target:  5'- uGGGGCGCGGgggcgugcgcgCCGACgGCCGCcGCCUCc -3'
miRNA:   3'- -CCUCGUGCCa----------GGCUG-CGGCG-CGGAGu -5'
31214 5' -61.3 NC_006560.1 + 81674 0.78 0.156016
Target:  5'- cGGGCGCGGgucgaggCCGAC-CCGCGCCUUg -3'
miRNA:   3'- cCUCGUGCCa------GGCUGcGGCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 25253 0.78 0.156016
Target:  5'- cGAGC-CGGaccCCGACGCCGCGCCg-- -3'
miRNA:   3'- cCUCGuGCCa--GGCUGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 83673 0.78 0.163813
Target:  5'- aGAGCGCGGcgcggggcUCCGGgGCCGCGCCg-- -3'
miRNA:   3'- cCUCGUGCC--------AGGCUgCGGCGCGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.