Results 1 - 20 of 259 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31214 | 5' | -61.3 | NC_006560.1 | + | 27774 | 0.81 | 0.104851 |
Target: 5'- cGAGUGCGGccaCCGACGCCGCGCC-CGg -3' miRNA: 3'- cCUCGUGCCa--GGCUGCGGCGCGGaGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 69991 | 0.79 | 0.124944 |
Target: 5'- uGGAGC-CGGgggCCGACGCCGcCGCCcCAc -3' miRNA: 3'- -CCUCGuGCCa--GGCUGCGGC-GCGGaGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 67647 | 0.79 | 0.131311 |
Target: 5'- cGGAGC-CGGagCCGA-GCCGCGCCUCc -3' miRNA: 3'- -CCUCGuGCCa-GGCUgCGGCGCGGAGu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 67722 | 0.79 | 0.131311 |
Target: 5'- cGGAGC-CGGagCCGA-GCCGCGCCUCc -3' miRNA: 3'- -CCUCGuGCCa-GGCUgCGGCGCGGAGu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 78506 | 0.79 | 0.141424 |
Target: 5'- cGGGCGCGG-CCGACGCCGC-CCUg- -3' miRNA: 3'- cCUCGUGCCaGGCUGCGGCGcGGAgu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 99314 | 0.78 | 0.14495 |
Target: 5'- uGGGGCGCGGgggcgugcgcgCCGACgGCCGCcGCCUCc -3' miRNA: 3'- -CCUCGUGCCa----------GGCUG-CGGCG-CGGAGu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 81674 | 0.78 | 0.156016 |
Target: 5'- cGGGCGCGGgucgaggCCGAC-CCGCGCCUUg -3' miRNA: 3'- cCUCGUGCCa------GGCUGcGGCGCGGAGu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 25253 | 0.78 | 0.156016 |
Target: 5'- cGAGC-CGGaccCCGACGCCGCGCCg-- -3' miRNA: 3'- cCUCGuGCCa--GGCUGCGGCGCGGagu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 83673 | 0.78 | 0.163813 |
Target: 5'- aGAGCGCGGcgcggggcUCCGGgGCCGCGCCg-- -3' miRNA: 3'- cCUCGUGCC--------AGGCUgCGGCGCGGagu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 9612 | 0.77 | 0.184853 |
Target: 5'- cGGGGCGCGGcccCUGGgGCCGCGCCg-- -3' miRNA: 3'- -CCUCGUGCCa--GGCUgCGGCGCGGagu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 54670 | 0.77 | 0.189338 |
Target: 5'- gGGGGCGCGGcagCCGcCgGCCGCGcCCUCGu -3' miRNA: 3'- -CCUCGUGCCa--GGCuG-CGGCGC-GGAGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 102570 | 0.76 | 0.193918 |
Target: 5'- -cAGCgccGCGGccgccgcCCGGCGCCGCGCCUCGa -3' miRNA: 3'- ccUCG---UGCCa------GGCUGCGGCGCGGAGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 23143 | 0.76 | 0.208244 |
Target: 5'- -cGGCACGGUCgCGcGCGCCGUGCCgCAc -3' miRNA: 3'- ccUCGUGCCAG-GC-UGCGGCGCGGaGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 15273 | 0.76 | 0.212717 |
Target: 5'- gGGGGCGCGGUcgcgggagCCGGCGCgGCggcggugGCCUCGg -3' miRNA: 3'- -CCUCGUGCCA--------GGCUGCGgCG-------CGGAGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 142298 | 0.76 | 0.223474 |
Target: 5'- cGGGCGCGG-CCGGCGCCG-GCCg-- -3' miRNA: 3'- cCUCGUGCCaGGCUGCGGCgCGGagu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 48098 | 0.75 | 0.239641 |
Target: 5'- gGGGGCGCGGagcuucCCGACGCCGCgacgGCCcCGa -3' miRNA: 3'- -CCUCGUGCCa-----GGCUGCGGCG----CGGaGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 67756 | 0.75 | 0.245244 |
Target: 5'- aGAGC-CGGagCCGA-GCCGCGCCUCc -3' miRNA: 3'- cCUCGuGCCa-GGCUgCGGCGCGGAGu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 35016 | 0.74 | 0.262105 |
Target: 5'- cGGGCGCccccuccGGUCCGcCGCCGCcCCUCAc -3' miRNA: 3'- cCUCGUG-------CCAGGCuGCGGCGcGGAGU- -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 23326 | 0.74 | 0.262703 |
Target: 5'- --cGcCGCGG-CCGGCGCCGCGCCg-- -3' miRNA: 3'- ccuC-GUGCCaGGCUGCGGCGCGGagu -5' |
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31214 | 5' | -61.3 | NC_006560.1 | + | 112641 | 0.74 | 0.274896 |
Target: 5'- cGAGCACGuGUUCuGCGCCcuggcGCGCCUCGu -3' miRNA: 3'- cCUCGUGC-CAGGcUGCGG-----CGCGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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