miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 3' -64.7 NC_006560.1 + 34669 0.65 0.537159
Target:  5'- --gGC-GGGUCgcGGGGAggaaccuaccuguCCCGCCGGg -3'
miRNA:   3'- guaCGaCCCGGa-CCCCU-------------GGGCGGCCg -5'
31215 3' -64.7 NC_006560.1 + 90472 0.66 0.483731
Target:  5'- --gGCgGGGCCgcaaaggcggcccagGGGGGCuucgagcgCCGCCuGGCg -3'
miRNA:   3'- guaCGaCCCGGa--------------CCCCUG--------GGCGG-CCG- -5'
31215 3' -64.7 NC_006560.1 + 65915 0.66 0.519404
Target:  5'- aCGUGC-GGGCCgUGGGccgccCCCGCaggucCGGCc -3'
miRNA:   3'- -GUACGaCCCGG-ACCCcu---GGGCG-----GCCG- -5'
31215 3' -64.7 NC_006560.1 + 142716 0.66 0.481933
Target:  5'- --cGCggccccgaGGcGCCcgGGGGGCCCGgcggagcCCGGCg -3'
miRNA:   3'- guaCGa-------CC-CGGa-CCCCUGGGC-------GGCCG- -5'
31215 3' -64.7 NC_006560.1 + 67069 0.66 0.500971
Target:  5'- gAUGgaGGGC--GGGGcuGCCCG-CGGCg -3'
miRNA:   3'- gUACgaCCCGgaCCCC--UGGGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 131953 0.66 0.500971
Target:  5'- --gGCUGGuCCUGGaGGCCuuCGCgCGGCg -3'
miRNA:   3'- guaCGACCcGGACCcCUGG--GCG-GCCG- -5'
31215 3' -64.7 NC_006560.1 + 76697 0.66 0.491862
Target:  5'- aGUGCgcgggGGcGCCUGGa-AgUCGCCGGCg -3'
miRNA:   3'- gUACGa----CC-CGGACCccUgGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 90120 0.66 0.500971
Target:  5'- gGUGac-GGUCggcGGGGACgCCGuCCGGCg -3'
miRNA:   3'- gUACgacCCGGa--CCCCUG-GGC-GGCCG- -5'
31215 3' -64.7 NC_006560.1 + 5161 0.66 0.510153
Target:  5'- --gGCcgGGGCCgcGGGGGCgggCCG-CGGCg -3'
miRNA:   3'- guaCGa-CCCGGa-CCCCUG---GGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 30843 0.66 0.491862
Target:  5'- --cGCUGGGCC-GGGcGccgcCCCGCCccGCg -3'
miRNA:   3'- guaCGACCCGGaCCC-Cu---GGGCGGc-CG- -5'
31215 3' -64.7 NC_006560.1 + 54922 0.66 0.49277
Target:  5'- --cGCUcggGGGCCggggcggccaucgucGGGGcucGCgCGCCGGCg -3'
miRNA:   3'- guaCGA---CCCGGa--------------CCCC---UGgGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 98191 0.66 0.510153
Target:  5'- -----aGGGCCUcGGGGACgugggCCGCgCGGUc -3'
miRNA:   3'- guacgaCCCGGA-CCCCUG-----GGCG-GCCG- -5'
31215 3' -64.7 NC_006560.1 + 11928 0.66 0.519404
Target:  5'- --cGC-GGGCCcgcagGaGGGGCCgGCgGGCc -3'
miRNA:   3'- guaCGaCCCGGa----C-CCCUGGgCGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 7951 0.66 0.491862
Target:  5'- --cGCUGGcGCCccgcguccGGACCCaCCGGCa -3'
miRNA:   3'- guaCGACC-CGGacc-----CCUGGGcGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 15140 0.66 0.500971
Target:  5'- --cGC-GGGCuCUGGGcccCCCGCCcccGGCg -3'
miRNA:   3'- guaCGaCCCG-GACCCcu-GGGCGG---CCG- -5'
31215 3' -64.7 NC_006560.1 + 52929 0.66 0.500057
Target:  5'- -cUGCcGGcGCCUGGaccccacGGG-CCGCCGGUg -3'
miRNA:   3'- guACGaCC-CGGACC-------CCUgGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 65043 0.66 0.482831
Target:  5'- --aGCgGGGCCgggcgcGGGGGCaggggCCGCgGGUg -3'
miRNA:   3'- guaCGaCCCGGa-----CCCCUG-----GGCGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 85494 0.66 0.518476
Target:  5'- --cGCuUGGGCUcGGGGucgccgggcugcuGCCCGCgGGg -3'
miRNA:   3'- guaCG-ACCCGGaCCCC-------------UGGGCGgCCg -5'
31215 3' -64.7 NC_006560.1 + 2180 0.66 0.519404
Target:  5'- --gGCaGGGCCUcGGG-CCCGgCGcGCg -3'
miRNA:   3'- guaCGaCCCGGAcCCCuGGGCgGC-CG- -5'
31215 3' -64.7 NC_006560.1 + 71955 0.66 0.482831
Target:  5'- ------cGGCCUGcGGGaggGCUCGCCGGCc -3'
miRNA:   3'- guacgacCCGGAC-CCC---UGGGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.