Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31215 | 3' | -64.7 | NC_006560.1 | + | 33302 | 0.83 | 0.039503 |
Target: 5'- --cGCgGaGGCCcgGGGGGCCCGCCGGCc -3' miRNA: 3'- guaCGaC-CCGGa-CCCCUGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 12779 | 0.81 | 0.051111 |
Target: 5'- --aGCUGGGCCgagaccgcgggGaGGGACCCGUCGGCc -3' miRNA: 3'- guaCGACCCGGa----------C-CCCUGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 139065 | 0.8 | 0.06273 |
Target: 5'- cCGUGCcGGGCCcGGGGGcgcgcCCUGCCGGCc -3' miRNA: 3'- -GUACGaCCCGGaCCCCU-----GGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 26013 | 0.79 | 0.071247 |
Target: 5'- cCGUGC-GGGCCgcgGGGGACCCGCgcgcaCGGUc -3' miRNA: 3'- -GUACGaCCCGGa--CCCCUGGGCG-----GCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 39931 | 0.79 | 0.078851 |
Target: 5'- --gGCUGGGUggCUGGGG-CCCGUCGGUa -3' miRNA: 3'- guaCGACCCG--GACCCCuGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 118206 | 0.78 | 0.085058 |
Target: 5'- gGUGCagcGGGCCgugcGGGacguGGCCCGCCGGCa -3' miRNA: 3'- gUACGa--CCCGGa---CCC----CUGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 27083 | 0.77 | 0.103959 |
Target: 5'- --cGUUGcGGCCUGGGGACCgaaGCgGGCc -3' miRNA: 3'- guaCGAC-CCGGACCCCUGGg--CGgCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 138808 | 0.75 | 0.143283 |
Target: 5'- aCGUGC-GGcGCCUGGGGACCa-CCGGg -3' miRNA: 3'- -GUACGaCC-CGGACCCCUGGgcGGCCg -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 31855 | 0.74 | 0.157893 |
Target: 5'- --cGCggggGGGCCgagGGGGgcgcccccgGCCCGCCGcGCg -3' miRNA: 3'- guaCGa---CCCGGa--CCCC---------UGGGCGGC-CG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 55453 | 0.74 | 0.165693 |
Target: 5'- --aGCccggGGcGCCcGGGGcaggGCCCGCCGGCg -3' miRNA: 3'- guaCGa---CC-CGGaCCCC----UGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 35175 | 0.74 | 0.169721 |
Target: 5'- --cGCcGGGCCcGGGGcCCCGCCccgggGGCg -3' miRNA: 3'- guaCGaCCCGGaCCCCuGGGCGG-----CCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 21033 | 0.73 | 0.186721 |
Target: 5'- --gGC-GGGCCggggcGGGGcGCCCGCgCGGCg -3' miRNA: 3'- guaCGaCCCGGa----CCCC-UGGGCG-GCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 2080 | 0.73 | 0.1912 |
Target: 5'- --gGCgGGGUCcGGGGGCCCggcGUCGGCg -3' miRNA: 3'- guaCGaCCCGGaCCCCUGGG---CGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 32921 | 0.73 | 0.1912 |
Target: 5'- --cGCcggGGGCCgagggcaGGGGGCcgucgCCGCCGGCg -3' miRNA: 3'- guaCGa--CCCGGa------CCCCUG-----GGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 26115 | 0.73 | 0.195772 |
Target: 5'- --cGCggGGGCUUcgcGGGGGcCCCGCCGGg -3' miRNA: 3'- guaCGa-CCCGGA---CCCCU-GGGCGGCCg -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 15768 | 0.73 | 0.195772 |
Target: 5'- --gGCgacuccGGGCCcGGGGGCCggcagggcccggCGCCGGCg -3' miRNA: 3'- guaCGa-----CCCGGaCCCCUGG------------GCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 99359 | 0.73 | 0.199969 |
Target: 5'- gCcgGCUGGGCguaCUGGGGcgggggcGCCCGCgCGcGCa -3' miRNA: 3'- -GuaCGACCCG---GACCCC-------UGGGCG-GC-CG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 71848 | 0.73 | 0.20044 |
Target: 5'- --cGCgGGGCCUGGG--CCCGgCGGCc -3' miRNA: 3'- guaCGaCCCGGACCCcuGGGCgGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 73222 | 0.73 | 0.20044 |
Target: 5'- --cGCUGGGCCUGcuccccaacaGGACcgCCGUCGGCg -3' miRNA: 3'- guaCGACCCGGACc---------CCUG--GGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 36134 | 0.73 | 0.20044 |
Target: 5'- --cGCcgGGGUCgagccGGGCCCGCCGGCg -3' miRNA: 3'- guaCGa-CCCGGacc--CCUGGGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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