miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 3' -64.7 NC_006560.1 + 34669 0.65 0.537159
Target:  5'- --gGC-GGGUCgcGGGGAggaaccuaccuguCCCGCCGGg -3'
miRNA:   3'- guaCGaCCCGGa-CCCCU-------------GGGCGGCCg -5'
31215 3' -64.7 NC_006560.1 + 2080 0.73 0.1912
Target:  5'- --gGCgGGGUCcGGGGGCCCggcGUCGGCg -3'
miRNA:   3'- guaCGaCCCGGaCCCCUGGG---CGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 32921 0.73 0.1912
Target:  5'- --cGCcggGGGCCgagggcaGGGGGCcgucgCCGCCGGCg -3'
miRNA:   3'- guaCGa--CCCGGa------CCCCUG-----GGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 26115 0.73 0.195772
Target:  5'- --cGCggGGGCUUcgcGGGGGcCCCGCCGGg -3'
miRNA:   3'- guaCGa-CCCGGA---CCCCU-GGGCGGCCg -5'
31215 3' -64.7 NC_006560.1 + 15768 0.73 0.195772
Target:  5'- --gGCgacuccGGGCCcGGGGGCCggcagggcccggCGCCGGCg -3'
miRNA:   3'- guaCGa-----CCCGGaCCCCUGG------------GCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 99359 0.73 0.199969
Target:  5'- gCcgGCUGGGCguaCUGGGGcgggggcGCCCGCgCGcGCa -3'
miRNA:   3'- -GuaCGACCCG---GACCCC-------UGGGCG-GC-CG- -5'
31215 3' -64.7 NC_006560.1 + 71848 0.73 0.20044
Target:  5'- --cGCgGGGCCUGGG--CCCGgCGGCc -3'
miRNA:   3'- guaCGaCCCGGACCCcuGGGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 73222 0.73 0.20044
Target:  5'- --cGCUGGGCCUGcuccccaacaGGACcgCCGUCGGCg -3'
miRNA:   3'- guaCGACCCGGACc---------CCUG--GGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 36134 0.73 0.20044
Target:  5'- --cGCcgGGGUCgagccGGGCCCGCCGGCg -3'
miRNA:   3'- guaCGa-CCCGGacc--CCUGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 21033 0.73 0.186721
Target:  5'- --gGC-GGGCCggggcGGGGcGCCCGCgCGGCg -3'
miRNA:   3'- guaCGaCCCGGa----CCCC-UGGGCG-GCCG- -5'
31215 3' -64.7 NC_006560.1 + 35175 0.74 0.169721
Target:  5'- --cGCcGGGCCcGGGGcCCCGCCccgggGGCg -3'
miRNA:   3'- guaCGaCCCGGaCCCCuGGGCGG-----CCG- -5'
31215 3' -64.7 NC_006560.1 + 55453 0.74 0.165693
Target:  5'- --aGCccggGGcGCCcGGGGcaggGCCCGCCGGCg -3'
miRNA:   3'- guaCGa---CC-CGGaCCCC----UGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 12779 0.81 0.051111
Target:  5'- --aGCUGGGCCgagaccgcgggGaGGGACCCGUCGGCc -3'
miRNA:   3'- guaCGACCCGGa----------C-CCCUGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 139065 0.8 0.06273
Target:  5'- cCGUGCcGGGCCcGGGGGcgcgcCCUGCCGGCc -3'
miRNA:   3'- -GUACGaCCCGGaCCCCU-----GGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 26013 0.79 0.071247
Target:  5'- cCGUGC-GGGCCgcgGGGGACCCGCgcgcaCGGUc -3'
miRNA:   3'- -GUACGaCCCGGa--CCCCUGGGCG-----GCCG- -5'
31215 3' -64.7 NC_006560.1 + 39931 0.79 0.078851
Target:  5'- --gGCUGGGUggCUGGGG-CCCGUCGGUa -3'
miRNA:   3'- guaCGACCCG--GACCCCuGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 118206 0.78 0.085058
Target:  5'- gGUGCagcGGGCCgugcGGGacguGGCCCGCCGGCa -3'
miRNA:   3'- gUACGa--CCCGGa---CCC----CUGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 27083 0.77 0.103959
Target:  5'- --cGUUGcGGCCUGGGGACCgaaGCgGGCc -3'
miRNA:   3'- guaCGAC-CCGGACCCCUGGg--CGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 138808 0.75 0.143283
Target:  5'- aCGUGC-GGcGCCUGGGGACCa-CCGGg -3'
miRNA:   3'- -GUACGaCC-CGGACCCCUGGgcGGCCg -5'
31215 3' -64.7 NC_006560.1 + 31855 0.74 0.157893
Target:  5'- --cGCggggGGGCCgagGGGGgcgcccccgGCCCGCCGcGCg -3'
miRNA:   3'- guaCGa---CCCGGa--CCCC---------UGGGCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.