miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 3' -64.7 NC_006560.1 + 513 0.66 0.528721
Target:  5'- --cGCcacgGGcGCCgGGGGGCggCgGCCGGCc -3'
miRNA:   3'- guaCGa---CC-CGGaCCCCUG--GgCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 1294 0.69 0.366095
Target:  5'- --cGCcGGGCCgcccGGGuuccGCCCGCaCGGCu -3'
miRNA:   3'- guaCGaCCCGGa---CCCc---UGGGCG-GCCG- -5'
31215 3' -64.7 NC_006560.1 + 2080 0.73 0.1912
Target:  5'- --gGCgGGGUCcGGGGGCCCggcGUCGGCg -3'
miRNA:   3'- guaCGaCCCGGaCCCCUGGG---CGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 2180 0.66 0.519404
Target:  5'- --gGCaGGGCCUcGGG-CCCGgCGcGCg -3'
miRNA:   3'- guaCGaCCCGGAcCCCuGGGCgGC-CG- -5'
31215 3' -64.7 NC_006560.1 + 2927 0.68 0.397435
Target:  5'- --gGCgGGGCggGGGaGACgCCGCCGaGCu -3'
miRNA:   3'- guaCGaCCCGgaCCC-CUG-GGCGGC-CG- -5'
31215 3' -64.7 NC_006560.1 + 5161 0.66 0.510153
Target:  5'- --gGCcgGGGCCgcGGGGGCgggCCG-CGGCg -3'
miRNA:   3'- guaCGa-CCCGGa-CCCCUG---GGCgGCCG- -5'
31215 3' -64.7 NC_006560.1 + 7951 0.66 0.491862
Target:  5'- --cGCUGGcGCCccgcguccGGACCCaCCGGCa -3'
miRNA:   3'- guaCGACC-CGGacc-----CCUGGGcGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 10300 0.67 0.456235
Target:  5'- --gGC-GGGCCgccGGGGACcgCCGCC-GCg -3'
miRNA:   3'- guaCGaCCCGGa--CCCCUG--GGCGGcCG- -5'
31215 3' -64.7 NC_006560.1 + 10479 0.68 0.405535
Target:  5'- --cGCcucgGGGCCcggggcgGGGGcCCCGUCGGg -3'
miRNA:   3'- guaCGa---CCCGGa------CCCCuGGGCGGCCg -5'
31215 3' -64.7 NC_006560.1 + 11362 0.72 0.220089
Target:  5'- gAUGC-GGGCC--GGGugCgGCCGGCg -3'
miRNA:   3'- gUACGaCCCGGacCCCugGgCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 11928 0.66 0.519404
Target:  5'- --cGC-GGGCCcgcagGaGGGGCCgGCgGGCc -3'
miRNA:   3'- guaCGaCCCGGa----C-CCCUGGgCGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 12779 0.81 0.051111
Target:  5'- --aGCUGGGCCgagaccgcgggGaGGGACCCGUCGGCc -3'
miRNA:   3'- guaCGACCCGGa----------C-CCCUGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 12845 0.69 0.351076
Target:  5'- --aGCUcGGGCC--GGGugCCGuuGGCc -3'
miRNA:   3'- guaCGA-CCCGGacCCCugGGCggCCG- -5'
31215 3' -64.7 NC_006560.1 + 12962 0.69 0.340826
Target:  5'- --cGCUGGuucuccggaugaaCCUGGGGAgCaUGCCGGCg -3'
miRNA:   3'- guaCGACCc------------GGACCCCUgG-GCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 15140 0.66 0.500971
Target:  5'- --cGC-GGGCuCUGGGcccCCCGCCcccGGCg -3'
miRNA:   3'- guaCGaCCCG-GACCCcu-GGGCGG---CCG- -5'
31215 3' -64.7 NC_006560.1 + 15768 0.73 0.195772
Target:  5'- --gGCgacuccGGGCCcGGGGGCCggcagggcccggCGCCGGCg -3'
miRNA:   3'- guaCGa-----CCCGGaCCCCUGG------------GCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 15872 0.7 0.322371
Target:  5'- --cGCgGcGGCgUGGGGGCCggCGaCCGGCg -3'
miRNA:   3'- guaCGaC-CCGgACCCCUGG--GC-GGCCG- -5'
31215 3' -64.7 NC_006560.1 + 17685 0.68 0.413739
Target:  5'- --cGCcgugGGGCCcgGGGGGgUCGUgGGCg -3'
miRNA:   3'- guaCGa---CCCGGa-CCCCUgGGCGgCCG- -5'
31215 3' -64.7 NC_006560.1 + 20181 0.67 0.438949
Target:  5'- aUcgGCUGGGggcgaCCggcccGGGGCUCGUCGGCc -3'
miRNA:   3'- -GuaCGACCC-----GGac---CCCUGGGCGGCCG- -5'
31215 3' -64.7 NC_006560.1 + 20958 0.67 0.438949
Target:  5'- -uUGCggcGGGCC-GGccgcGGCgCCGCCGGCu -3'
miRNA:   3'- guACGa--CCCGGaCCc---CUG-GGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.