miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 5' -57.8 NC_006560.1 + 126689 0.66 0.848223
Target:  5'- -gACgUGG-GGcCCCaGCAGcACCCGCAc -3'
miRNA:   3'- gaUGgACCaCUuGGG-CGUC-UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 114442 0.66 0.848223
Target:  5'- -cGCCgccacGGccAACCCGUGGGCCuCGCAg -3'
miRNA:   3'- gaUGGa----CCacUUGGGCGUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 35069 0.66 0.848223
Target:  5'- -aGCCUcGG-GGGCCCaucUGGGCCCGCGc -3'
miRNA:   3'- gaUGGA-CCaCUUGGGc--GUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 71637 0.66 0.848223
Target:  5'- gCUGCCUGGUGGagggcgggGCguggaCGCGGGCCUcgGCc -3'
miRNA:   3'- -GAUGGACCACU--------UGg----GCGUCUGGG--CGu -5'
31215 5' -57.8 NC_006560.1 + 36154 0.66 0.848223
Target:  5'- -cGCC-GGcGuucuCCCGCGGACCgGCGg -3'
miRNA:   3'- gaUGGaCCaCuu--GGGCGUCUGGgCGU- -5'
31215 5' -57.8 NC_006560.1 + 23790 0.66 0.848223
Target:  5'- -cGCCgc-UGcuGGCCCGCAG-CCCGCGg -3'
miRNA:   3'- gaUGGaccAC--UUGGGCGUCuGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 126486 0.66 0.840239
Target:  5'- -aACCUGGUGcgguGCUCGCggugguagagguAGGCgCGCAc -3'
miRNA:   3'- gaUGGACCACu---UGGGCG------------UCUGgGCGU- -5'
31215 5' -57.8 NC_006560.1 + 117522 0.66 0.840239
Target:  5'- cCUGCCUGGccgccUCCGgGGugCCGCu -3'
miRNA:   3'- -GAUGGACCacuu-GGGCgUCugGGCGu -5'
31215 5' -57.8 NC_006560.1 + 74836 0.66 0.840239
Target:  5'- cCU-CCUGGUGAGCUUuucuCGGACCaCGCc -3'
miRNA:   3'- -GAuGGACCACUUGGGc---GUCUGG-GCGu -5'
31215 5' -57.8 NC_006560.1 + 23902 0.66 0.832068
Target:  5'- -cGCCgacgccGCCCGCGcGGCCCGCAa -3'
miRNA:   3'- gaUGGaccacuUGGGCGU-CUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 121968 0.66 0.832068
Target:  5'- -cGCCUGGccGAgacgcACCUGCGGG-CCGCGg -3'
miRNA:   3'- gaUGGACCa-CU-----UGGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 58634 0.66 0.832068
Target:  5'- -cGCCUGGUcGGACUUcuuCAGcGCCCGCGa -3'
miRNA:   3'- gaUGGACCA-CUUGGGc--GUC-UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 73490 0.66 0.832068
Target:  5'- gCU-CCUGGaGcGCUCGCGGGCCgGCc -3'
miRNA:   3'- -GAuGGACCaCuUGGGCGUCUGGgCGu -5'
31215 5' -57.8 NC_006560.1 + 113102 0.66 0.832068
Target:  5'- -cGCCgacgcGGcGAacgaccGCCCGCAccGGCCCGCGg -3'
miRNA:   3'- gaUGGa----CCaCU------UGGGCGU--CUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 37875 0.66 0.82372
Target:  5'- -aGCagUGGaUGGGCCCGCGcGugUCGCAg -3'
miRNA:   3'- gaUGg-ACC-ACUUGGGCGU-CugGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 46994 0.66 0.82372
Target:  5'- uCU-CCUucgagGAGCCCGCGGGCCgCGCc -3'
miRNA:   3'- -GAuGGAcca--CUUGGGCGUCUGG-GCGu -5'
31215 5' -57.8 NC_006560.1 + 55668 0.66 0.82372
Target:  5'- gUGCCaGGUGAACUCGCAGGugaggUUGCGg -3'
miRNA:   3'- gAUGGaCCACUUGGGCGUCUg----GGCGU- -5'
31215 5' -57.8 NC_006560.1 + 79907 0.66 0.82372
Target:  5'- -cGCCUGGcacGGCCCGCGGugUcaCGCu -3'
miRNA:   3'- gaUGGACCac-UUGGGCGUCugG--GCGu -5'
31215 5' -57.8 NC_006560.1 + 32881 0.66 0.82372
Target:  5'- -gGCCcGGgGAGgCCGCGGgggggcgcGCCCGCGg -3'
miRNA:   3'- gaUGGaCCaCUUgGGCGUC--------UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 90297 0.66 0.821181
Target:  5'- -gGCCgucGUgGGGCCCGUcgccguggcgcuccGGGCCCGCAa -3'
miRNA:   3'- gaUGGac-CA-CUUGGGCG--------------UCUGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.