Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3123 | 3' | -57 | NC_001493.1 | + | 12075 | 0.66 | 0.88599 |
Target: 5'- uAUCAUggaCGAGgGggUUCCUCGGGAUg-- -3' miRNA: 3'- -UGGUA---GCUC-CuuGAGGAGCCCUGgcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 102198 | 0.66 | 0.88599 |
Target: 5'- cGCUcgCGGGGAccaucucaucGCUCUcaUCGGaucucgGACCGGg -3' miRNA: 3'- -UGGuaGCUCCU----------UGAGG--AGCC------CUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 89401 | 0.66 | 0.871974 |
Target: 5'- aACCAUCcggGGGGAGaagugUCUCGGGcCCGa -3' miRNA: 3'- -UGGUAG---CUCCUUga---GGAGCCCuGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 67510 | 0.66 | 0.864651 |
Target: 5'- uACCAUCGGGGuuggcGCUaCUCGcGGAUaaaGGa -3' miRNA: 3'- -UGGUAGCUCCu----UGAgGAGC-CCUGg--CC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 57816 | 0.66 | 0.88599 |
Target: 5'- cGCCGUCGAuuucucuauGGC-CCUCGGGAucacCCGGu -3' miRNA: 3'- -UGGUAGCUcc-------UUGaGGAGCCCU----GGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 8959 | 0.66 | 0.857124 |
Target: 5'- aGCCcuUCGGGGAGaaaCCUggCGGGugUGGg -3' miRNA: 3'- -UGGu-AGCUCCUUga-GGA--GCCCugGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 127629 | 0.66 | 0.88599 |
Target: 5'- uAUCAUggaCGAGgGggUUCCUCGGGAUg-- -3' miRNA: 3'- -UGGUA---GCUC-CuuGAGGAGCCCUGgcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 101917 | 0.66 | 0.88599 |
Target: 5'- -aCAUCGGGGGACaaugUCgCUCGGaccuCCGGc -3' miRNA: 3'- ugGUAGCUCCUUG----AG-GAGCCcu--GGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 124513 | 0.66 | 0.857124 |
Target: 5'- aGCCcuUCGGGGAGaaaCCUggCGGGugUGGg -3' miRNA: 3'- -UGGu-AGCUCCUUga-GGA--GCCCugGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 84960 | 0.67 | 0.83338 |
Target: 5'- uUgAUCGAGGGGCUCCUCGauACgUGGu -3' miRNA: 3'- uGgUAGCUCCUUGAGGAGCccUG-GCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 112868 | 0.67 | 0.83338 |
Target: 5'- cCCAUCGAGaAGC-CC-CGGGAUCGc -3' miRNA: 3'- uGGUAGCUCcUUGaGGaGCCCUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 84880 | 0.67 | 0.841482 |
Target: 5'- ----aCGAGGGGgUCCUCGGGAUg-- -3' miRNA: 3'- ugguaGCUCCUUgAGGAGCCCUGgcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 84743 | 0.67 | 0.808037 |
Target: 5'- -aCAUCGAGGAAgccCcCCUCGGGGaugacaUGGg -3' miRNA: 3'- ugGUAGCUCCUU---GaGGAGCCCUg-----GCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 91495 | 0.67 | 0.81665 |
Target: 5'- -gCGUCGAGGAugU--UCGGGcuccACCGGu -3' miRNA: 3'- ugGUAGCUCCUugAggAGCCC----UGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 102127 | 0.68 | 0.781298 |
Target: 5'- uCCAUCGAGGGAUagaaCgaUGGGGCCGc -3' miRNA: 3'- uGGUAGCUCCUUGa---GgaGCCCUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 21590 | 0.68 | 0.789453 |
Target: 5'- aACCgAUCGGgauggggauuaccGGGACgCCUCGGaGACCGa -3' miRNA: 3'- -UGG-UAGCU-------------CCUUGaGGAGCC-CUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 29865 | 0.68 | 0.762809 |
Target: 5'- cGCCAgcUCGAgagucgcguugcGGAGCUCCagGGGaaGCUGGg -3' miRNA: 3'- -UGGU--AGCU------------CCUUGAGGagCCC--UGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 19934 | 0.68 | 0.75339 |
Target: 5'- cGCC-UCGuGG-GCUUCUCGGGAuaGGg -3' miRNA: 3'- -UGGuAGCuCCuUGAGGAGCCCUggCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 87938 | 0.68 | 0.75339 |
Target: 5'- uUUAUCGAGGucauGGCUCa-CGGGAUCGGc -3' miRNA: 3'- uGGUAGCUCC----UUGAGgaGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 124776 | 0.68 | 0.799268 |
Target: 5'- cGCuCAUCGGGGAgcGCUCCaugaugUCGGGAUUc- -3' miRNA: 3'- -UG-GUAGCUCCU--UGAGG------AGCCCUGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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