Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3123 | 3' | -57 | NC_001493.1 | + | 4118 | 1.11 | 0.001932 |
Target: 5'- aACCAUCGAGGAACUCCUCGGGACCGGg -3' miRNA: 3'- -UGGUAGCUCCUUGAGGAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 119673 | 1.11 | 0.001932 |
Target: 5'- aACCAUCGAGGAACUCCUCGGGACCGGg -3' miRNA: 3'- -UGGUAGCUCCUUGAGGAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 14287 | 0.79 | 0.236547 |
Target: 5'- cACCuGUCcAGGAAUUCUUCGGGACUGGu -3' miRNA: 3'- -UGG-UAGcUCCUUGAGGAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 129841 | 0.79 | 0.236547 |
Target: 5'- cACCuGUCcAGGAAUUCUUCGGGACUGGu -3' miRNA: 3'- -UGG-UAGcUCCUUGAGGAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 95089 | 0.78 | 0.278952 |
Target: 5'- aGCC--CGAGGGGCUCCUUGaGGACCGu -3' miRNA: 3'- -UGGuaGCUCCUUGAGGAGC-CCUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 88833 | 0.76 | 0.365275 |
Target: 5'- --gGUCGAGGAACUCCggcUCGGuGGCCGu -3' miRNA: 3'- uggUAGCUCCUUGAGG---AGCC-CUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 19779 | 0.74 | 0.450123 |
Target: 5'- cACCggCGGGuagcagccccaGAACaUCUUCGGGACCGGa -3' miRNA: 3'- -UGGuaGCUC-----------CUUG-AGGAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 72854 | 0.73 | 0.477624 |
Target: 5'- aACCugaaGAGGAGCaaCUCGuGGGCCGGg -3' miRNA: 3'- -UGGuag-CUCCUUGagGAGC-CCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 103214 | 0.73 | 0.515524 |
Target: 5'- aGCuCGUCc-GGuGCUCCgUCGGGACCGGu -3' miRNA: 3'- -UG-GUAGcuCCuUGAGG-AGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 119176 | 0.72 | 0.534928 |
Target: 5'- gAUCcgUGGGGcGCUCCUCGGGACg-- -3' miRNA: 3'- -UGGuaGCUCCuUGAGGAGCCCUGgcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 3621 | 0.72 | 0.534928 |
Target: 5'- gAUCcgUGGGGcGCUCCUCGGGACg-- -3' miRNA: 3'- -UGGuaGCUCCuUGAGGAGCCCUGgcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 31224 | 0.72 | 0.564491 |
Target: 5'- --gAUCGAaGAGCUCCUgGGGACCa- -3' miRNA: 3'- uggUAGCUcCUUGAGGAgCCCUGGcc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 95654 | 0.71 | 0.63881 |
Target: 5'- aGCgGUUacagGAGGAGCcacccccgacgacguUCCUCGGGAgCGGg -3' miRNA: 3'- -UGgUAG----CUCCUUG---------------AGGAGCCCUgGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 27606 | 0.7 | 0.653937 |
Target: 5'- cGCC-UCGAGGGgacccgcGCgggCUCGGGAUCGGc -3' miRNA: 3'- -UGGuAGCUCCU-------UGag-GAGCCCUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 126681 | 0.7 | 0.665007 |
Target: 5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3' miRNA: 3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 109837 | 0.7 | 0.665007 |
Target: 5'- uACgCGUCGAGGAAC-CCUCGGucgcucaCGGg -3' miRNA: 3'- -UG-GUAGCUCCUUGaGGAGCCcug----GCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 11126 | 0.7 | 0.665007 |
Target: 5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3' miRNA: 3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 111730 | 0.7 | 0.675044 |
Target: 5'- gACCGUCGGGGAcuuugacgcgcuGCUCg-CGGaGACCGc -3' miRNA: 3'- -UGGUAGCUCCU------------UGAGgaGCC-CUGGCc -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 21082 | 0.69 | 0.703928 |
Target: 5'- gGCCAUCGAcuuggucuacggcGGGuacGCUCCcgCGGcACCGGg -3' miRNA: 3'- -UGGUAGCU-------------CCU---UGAGGa-GCCcUGGCC- -5' |
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3123 | 3' | -57 | NC_001493.1 | + | 88175 | 0.69 | 0.743868 |
Target: 5'- cACC-UUGGGGAACgCC-CGGGguACCGGc -3' miRNA: 3'- -UGGuAGCUCCUUGaGGaGCCC--UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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