miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3123 3' -57 NC_001493.1 + 91495 0.67 0.81665
Target:  5'- -gCGUCGAGGAugU--UCGGGcuccACCGGu -3'
miRNA:   3'- ugGUAGCUCCUugAggAGCCC----UGGCC- -5'
3123 3' -57 NC_001493.1 + 88175 0.69 0.743868
Target:  5'- cACC-UUGGGGAACgCC-CGGGguACCGGc -3'
miRNA:   3'- -UGGuAGCUCCUUGaGGaGCCC--UGGCC- -5'
3123 3' -57 NC_001493.1 + 87938 0.68 0.75339
Target:  5'- uUUAUCGAGGucauGGCUCa-CGGGAUCGGc -3'
miRNA:   3'- uGGUAGCUCC----UUGAGgaGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 19934 0.68 0.75339
Target:  5'- cGCC-UCGuGG-GCUUCUCGGGAuaGGg -3'
miRNA:   3'- -UGGuAGCuCCuUGAGGAGCCCUggCC- -5'
3123 3' -57 NC_001493.1 + 51172 0.68 0.788553
Target:  5'- cACCGUaaaCGGGGGGCUCCgucucuucguacCGGGAgaGGg -3'
miRNA:   3'- -UGGUA---GCUCCUUGAGGa-----------GCCCUggCC- -5'
3123 3' -57 NC_001493.1 + 12717 0.68 0.799268
Target:  5'- cCCA-CGGGGGAgcCUCaC-CGGGAUCGGg -3'
miRNA:   3'- uGGUaGCUCCUU--GAG-GaGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 128271 0.68 0.799268
Target:  5'- cCCA-CGGGGGAgcCUCaC-CGGGAUCGGg -3'
miRNA:   3'- uGGUaGCUCCUU--GAG-GaGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 87684 0.68 0.799268
Target:  5'- cGCCG-CGGGGGGCaggUCC-CGGGGuagguCCGGg -3'
miRNA:   3'- -UGGUaGCUCCUUG---AGGaGCCCU-----GGCC- -5'
3123 3' -57 NC_001493.1 + 87738 0.68 0.799268
Target:  5'- cGCCG-CGGGGGGCaggUCC-CGGGGuagguCCGGg -3'
miRNA:   3'- -UGGUaGCUCCUUG---AGGaGCCCU-----GGCC- -5'
3123 3' -57 NC_001493.1 + 109837 0.7 0.665007
Target:  5'- uACgCGUCGAGGAAC-CCUCGGucgcucaCGGg -3'
miRNA:   3'- -UG-GUAGCUCCUUGaGGAGCCcug----GCC- -5'
3123 3' -57 NC_001493.1 + 126681 0.7 0.665007
Target:  5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3'
miRNA:   3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5'
3123 3' -57 NC_001493.1 + 11126 0.7 0.665007
Target:  5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3'
miRNA:   3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5'
3123 3' -57 NC_001493.1 + 119673 1.11 0.001932
Target:  5'- aACCAUCGAGGAACUCCUCGGGACCGGg -3'
miRNA:   3'- -UGGUAGCUCCUUGAGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 14287 0.79 0.236547
Target:  5'- cACCuGUCcAGGAAUUCUUCGGGACUGGu -3'
miRNA:   3'- -UGG-UAGcUCCUUGAGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 129841 0.79 0.236547
Target:  5'- cACCuGUCcAGGAAUUCUUCGGGACUGGu -3'
miRNA:   3'- -UGG-UAGcUCCUUGAGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 88833 0.76 0.365275
Target:  5'- --gGUCGAGGAACUCCggcUCGGuGGCCGu -3'
miRNA:   3'- uggUAGCUCCUUGAGG---AGCC-CUGGCc -5'
3123 3' -57 NC_001493.1 + 19779 0.74 0.450123
Target:  5'- cACCggCGGGuagcagccccaGAACaUCUUCGGGACCGGa -3'
miRNA:   3'- -UGGuaGCUC-----------CUUG-AGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 72854 0.73 0.477624
Target:  5'- aACCugaaGAGGAGCaaCUCGuGGGCCGGg -3'
miRNA:   3'- -UGGuag-CUCCUUGagGAGC-CCUGGCC- -5'
3123 3' -57 NC_001493.1 + 95654 0.71 0.63881
Target:  5'- aGCgGUUacagGAGGAGCcacccccgacgacguUCCUCGGGAgCGGg -3'
miRNA:   3'- -UGgUAG----CUCCUUG---------------AGGAGCCCUgGCC- -5'
3123 3' -57 NC_001493.1 + 27606 0.7 0.653937
Target:  5'- cGCC-UCGAGGGgacccgcGCgggCUCGGGAUCGGc -3'
miRNA:   3'- -UGGuAGCUCCU-------UGag-GAGCCCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.