miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3123 3' -57 NC_001493.1 + 3621 0.72 0.534928
Target:  5'- gAUCcgUGGGGcGCUCCUCGGGACg-- -3'
miRNA:   3'- -UGGuaGCUCCuUGAGGAGCCCUGgcc -5'
3123 3' -57 NC_001493.1 + 4118 1.11 0.001932
Target:  5'- aACCAUCGAGGAACUCCUCGGGACCGGg -3'
miRNA:   3'- -UGGUAGCUCCUUGAGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 8959 0.66 0.857124
Target:  5'- aGCCcuUCGGGGAGaaaCCUggCGGGugUGGg -3'
miRNA:   3'- -UGGu-AGCUCCUUga-GGA--GCCCugGCC- -5'
3123 3' -57 NC_001493.1 + 9222 0.68 0.799268
Target:  5'- cGCuCAUCGGGGAgcGCUCCaugaugUCGGGAUUc- -3'
miRNA:   3'- -UG-GUAGCUCCU--UGAGG------AGCCCUGGcc -5'
3123 3' -57 NC_001493.1 + 11126 0.7 0.665007
Target:  5'- cUCAgacCGAGG-GCUCC-CGGGACCaGGg -3'
miRNA:   3'- uGGUa--GCUCCuUGAGGaGCCCUGG-CC- -5'
3123 3' -57 NC_001493.1 + 12075 0.66 0.88599
Target:  5'- uAUCAUggaCGAGgGggUUCCUCGGGAUg-- -3'
miRNA:   3'- -UGGUA---GCUC-CuuGAGGAGCCCUGgcc -5'
3123 3' -57 NC_001493.1 + 12717 0.68 0.799268
Target:  5'- cCCA-CGGGGGAgcCUCaC-CGGGAUCGGg -3'
miRNA:   3'- uGGUaGCUCCUU--GAG-GaGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 12951 0.68 0.787651
Target:  5'- cACCA-CGuGGAGaaCCUCGGGAguagagccuccgucCCGGg -3'
miRNA:   3'- -UGGUaGCuCCUUgaGGAGCCCU--------------GGCC- -5'
3123 3' -57 NC_001493.1 + 12998 0.69 0.743868
Target:  5'- aGCCGuUCGAgaaucGGGuCUCUgucaCGGGGCCGGa -3'
miRNA:   3'- -UGGU-AGCU-----CCUuGAGGa---GCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 14287 0.79 0.236547
Target:  5'- cACCuGUCcAGGAAUUCUUCGGGACUGGu -3'
miRNA:   3'- -UGG-UAGcUCCUUGAGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 19779 0.74 0.450123
Target:  5'- cACCggCGGGuagcagccccaGAACaUCUUCGGGACCGGa -3'
miRNA:   3'- -UGGuaGCUC-----------CUUG-AGGAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 19934 0.68 0.75339
Target:  5'- cGCC-UCGuGG-GCUUCUCGGGAuaGGg -3'
miRNA:   3'- -UGGuAGCuCCuUGAGGAGCCCUggCC- -5'
3123 3' -57 NC_001493.1 + 21082 0.69 0.703928
Target:  5'- gGCCAUCGAcuuggucuacggcGGGuacGCUCCcgCGGcACCGGg -3'
miRNA:   3'- -UGGUAGCU-------------CCU---UGAGGa-GCCcUGGCC- -5'
3123 3' -57 NC_001493.1 + 21590 0.68 0.789453
Target:  5'- aACCgAUCGGgauggggauuaccGGGACgCCUCGGaGACCGa -3'
miRNA:   3'- -UGG-UAGCU-------------CCUUGaGGAGCC-CUGGCc -5'
3123 3' -57 NC_001493.1 + 27606 0.7 0.653937
Target:  5'- cGCC-UCGAGGGgacccgcGCgggCUCGGGAUCGGc -3'
miRNA:   3'- -UGGuAGCUCCU-------UGag-GAGCCCUGGCC- -5'
3123 3' -57 NC_001493.1 + 29865 0.68 0.762809
Target:  5'- cGCCAgcUCGAgagucgcguugcGGAGCUCCagGGGaaGCUGGg -3'
miRNA:   3'- -UGGU--AGCU------------CCUUGAGGagCCC--UGGCC- -5'
3123 3' -57 NC_001493.1 + 31224 0.72 0.564491
Target:  5'- --gAUCGAaGAGCUCCUgGGGACCa- -3'
miRNA:   3'- uggUAGCUcCUUGAGGAgCCCUGGcc -5'
3123 3' -57 NC_001493.1 + 34103 0.68 0.772114
Target:  5'- uGCCAuauUUGGGGA--UgCUCGGGGCuCGGg -3'
miRNA:   3'- -UGGU---AGCUCCUugAgGAGCCCUG-GCC- -5'
3123 3' -57 NC_001493.1 + 51172 0.68 0.788553
Target:  5'- cACCGUaaaCGGGGGGCUCCgucucuucguacCGGGAgaGGg -3'
miRNA:   3'- -UGGUA---GCUCCUUGAGGa-----------GCCCUggCC- -5'
3123 3' -57 NC_001493.1 + 57507 0.68 0.799268
Target:  5'- gGCCAguguccaaUCG-GGAAC-CUcgaucgucaggaUCGGGACCGGu -3'
miRNA:   3'- -UGGU--------AGCuCCUUGaGG------------AGCCCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.