miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 3' -65.7 NC_006560.1 + 149328 0.66 0.518423
Target:  5'- gGCGGGccggagacggcGGCGGcUCCUCCccGCCgCGg- -3'
miRNA:   3'- gCGCCC-----------CCGCCaAGGAGG--CGGgGCag -5'
31231 3' -65.7 NC_006560.1 + 142368 0.66 0.518423
Target:  5'- gGcCGGGGGCGGcggCCUCCGggagggccgagCCCGa- -3'
miRNA:   3'- gC-GCCCCCGCCaa-GGAGGCg----------GGGCag -5'
31231 3' -65.7 NC_006560.1 + 143341 0.66 0.518423
Target:  5'- gGCGGcGGGCGccccccUCCUCCccaaCCCgGUCu -3'
miRNA:   3'- gCGCC-CCCGCca----AGGAGGc---GGGgCAG- -5'
31231 3' -65.7 NC_006560.1 + 8674 0.66 0.509331
Target:  5'- uCGCcGGcGGCGGcgCCUgaGCgCCGUCu -3'
miRNA:   3'- -GCGcCC-CCGCCaaGGAggCGgGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 57255 0.66 0.509331
Target:  5'- gCGCGGGGGggccuCGGggUCCggcgCgGCCUCGg- -3'
miRNA:   3'- -GCGCCCCC-----GCCa-AGGa---GgCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 51478 0.66 0.509331
Target:  5'- gCGCGGGcGGCGGccCCgaggCCGaggCCCGg- -3'
miRNA:   3'- -GCGCCC-CCGCCaaGGa---GGCg--GGGCag -5'
31231 3' -65.7 NC_006560.1 + 126378 0.66 0.509331
Target:  5'- uCGaCGGGGGCGccgcccGggUCUCCGCCgCG-Cg -3'
miRNA:   3'- -GC-GCCCCCGC------CaaGGAGGCGGgGCaG- -5'
31231 3' -65.7 NC_006560.1 + 28328 0.66 0.508425
Target:  5'- cCGCucgGGGGGCGGcgCCgcccggcUCCuCCCCG-Cg -3'
miRNA:   3'- -GCG---CCCCCGCCaaGG-------AGGcGGGGCaG- -5'
31231 3' -65.7 NC_006560.1 + 76700 0.66 0.508425
Target:  5'- gCGCGGGGGCGccuggaaGUcgCCggCgGCCCUGg- -3'
miRNA:   3'- -GCGCCCCCGC-------CAa-GGa-GgCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 14559 0.66 0.500306
Target:  5'- --aGGGGGCGGcggCgCUCaCGCCUCGg- -3'
miRNA:   3'- gcgCCCCCGCCaa-G-GAG-GCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 121833 0.66 0.500306
Target:  5'- uCGCGGaGGCGGggCg-CgCGCCCgCGUCc -3'
miRNA:   3'- -GCGCCcCCGCCaaGgaG-GCGGG-GCAG- -5'
31231 3' -65.7 NC_006560.1 + 145079 0.66 0.500306
Target:  5'- gGCGGGGcCGGg-CCUCCcgaGCCCCu-- -3'
miRNA:   3'- gCGCCCCcGCCaaGGAGG---CGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 103076 0.66 0.500306
Target:  5'- cCGCGGGGaCGGggggaCCggucCCGCCCCc-- -3'
miRNA:   3'- -GCGCCCCcGCCaa---GGa---GGCGGGGcag -5'
31231 3' -65.7 NC_006560.1 + 32843 0.66 0.500306
Target:  5'- aCGCGGGcGGCGGgcag-CC-CCCCGg- -3'
miRNA:   3'- -GCGCCC-CCGCCaaggaGGcGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 119776 0.66 0.500306
Target:  5'- uGcCGGGuGGCGGUgCCcCCGCCCg--- -3'
miRNA:   3'- gC-GCCC-CCGCCAaGGaGGCGGGgcag -5'
31231 3' -65.7 NC_006560.1 + 138502 0.66 0.500306
Target:  5'- gGCGaGGcCGGggCg-CCGCCCCGUCu -3'
miRNA:   3'- gCGCcCCcGCCaaGgaGGCGGGGCAG- -5'
31231 3' -65.7 NC_006560.1 + 56073 0.66 0.500306
Target:  5'- aGCGGGGGgugcgcccCGGggcccgcccCCUCCGCCCag-Cg -3'
miRNA:   3'- gCGCCCCC--------GCCaa-------GGAGGCGGGgcaG- -5'
31231 3' -65.7 NC_006560.1 + 6327 0.66 0.499408
Target:  5'- -cCGGGGacgccgcGCGGgcgCC-CCGCCCCGg- -3'
miRNA:   3'- gcGCCCC-------CGCCaa-GGaGGCGGGGCag -5'
31231 3' -65.7 NC_006560.1 + 59534 0.66 0.499408
Target:  5'- gGCGGgcucGGGuCGGUUaaauacgCCUCCGgCCCGg- -3'
miRNA:   3'- gCGCC----CCC-GCCAA-------GGAGGCgGGGCag -5'
31231 3' -65.7 NC_006560.1 + 127295 0.66 0.494926
Target:  5'- uGCGGGGGUGcggccacgcccccgcGaaCCUCgGCCgUGUCg -3'
miRNA:   3'- gCGCCCCCGC---------------CaaGGAGgCGGgGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.