miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31231 5' -58.3 NC_006560.1 + 527 0.66 0.819291
Target:  5'- gGGGGCGGcggccgGCCGCgccccGGGUcCCCGGCGu- -3'
miRNA:   3'- -UUCUGCC------UGGCG-----UCCAuGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 118048 0.66 0.819291
Target:  5'- gGGGGCGGgcccggcgccGCCGCGGGcgccCCCGcCGAg -3'
miRNA:   3'- -UUCUGCC----------UGGCGUCCau--GGGCuGCUa -5'
31231 5' -58.3 NC_006560.1 + 37880 0.66 0.819291
Target:  5'- uGGAUGGGCCcgcgcgugucGCAGGagGCCCgGAUGAc -3'
miRNA:   3'- uUCUGCCUGG----------CGUCCa-UGGG-CUGCUa -5'
31231 5' -58.3 NC_006560.1 + 119607 0.66 0.819291
Target:  5'- -cGGCGGGgcCCG-AGGgcCCCGACGGc -3'
miRNA:   3'- uuCUGCCU--GGCgUCCauGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 27225 0.66 0.819291
Target:  5'- cGGGGCcgGGACCGCGGGgcggGgCCGGCc-- -3'
miRNA:   3'- -UUCUG--CCUGGCGUCCa---UgGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 135386 0.66 0.810666
Target:  5'- gGGGGCGGagGCCGCGGGggugucGCUCGGCc-- -3'
miRNA:   3'- -UUCUGCC--UGGCGUCCa-----UGGGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 15962 0.66 0.810666
Target:  5'- gGAGuACGG-CCGCAcGUGCCCGGaGAg -3'
miRNA:   3'- -UUC-UGCCuGGCGUcCAUGGGCUgCUa -5'
31231 5' -58.3 NC_006560.1 + 110423 0.66 0.801882
Target:  5'- gGGGACGGcCUGCGGGgccgccgccGCCCuGugGGUg -3'
miRNA:   3'- -UUCUGCCuGGCGUCCa--------UGGG-CugCUA- -5'
31231 5' -58.3 NC_006560.1 + 119233 0.66 0.801882
Target:  5'- -cGACGGACCGCccaaucgucguGGUcUUCGGCGGUg -3'
miRNA:   3'- uuCUGCCUGGCGu----------CCAuGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 77710 0.66 0.792947
Target:  5'- --cGCGGAgCCgGCGGGcGCCCGGCGc- -3'
miRNA:   3'- uucUGCCU-GG-CGUCCaUGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 52947 0.66 0.792947
Target:  5'- --cACGGGCCGCcGGUGCgCGGCc-- -3'
miRNA:   3'- uucUGCCUGGCGuCCAUGgGCUGcua -5'
31231 5' -58.3 NC_006560.1 + 140750 0.66 0.792947
Target:  5'- cAGGGCGuGGCU-CAGGUcuucaaggaACCCGGCGGUg -3'
miRNA:   3'- -UUCUGC-CUGGcGUCCA---------UGGGCUGCUA- -5'
31231 5' -58.3 NC_006560.1 + 121987 0.66 0.792947
Target:  5'- --uGCGGGCCGCGGuGUACCgGGaggaGAc -3'
miRNA:   3'- uucUGCCUGGCGUC-CAUGGgCUg---CUa -5'
31231 5' -58.3 NC_006560.1 + 52336 0.66 0.792947
Target:  5'- -cGGCGcGGCCGUGGGcGCCCuGCGGc -3'
miRNA:   3'- uuCUGC-CUGGCGUCCaUGGGcUGCUa -5'
31231 5' -58.3 NC_006560.1 + 85276 0.66 0.792045
Target:  5'- gGAGGCGGACCGCcgucuccuccucgGGGUGCCacaccucCGGa -3'
miRNA:   3'- -UUCUGCCUGGCG-------------UCCAUGGgcu----GCUa -5'
31231 5' -58.3 NC_006560.1 + 13484 0.66 0.790237
Target:  5'- -cGACGGGCaCGCugggggucuggaacGGGUuCUCGACGAa -3'
miRNA:   3'- uuCUGCCUG-GCG--------------UCCAuGGGCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 2071 0.66 0.783868
Target:  5'- -cGGCGcGGCgGCGGGguccggggGCCCGGCGu- -3'
miRNA:   3'- uuCUGC-CUGgCGUCCa-------UGGGCUGCua -5'
31231 5' -58.3 NC_006560.1 + 108916 0.66 0.783868
Target:  5'- cGGGACuGGugCGCagcgaggucAGGUACUgGGCGAg -3'
miRNA:   3'- -UUCUG-CCugGCG---------UCCAUGGgCUGCUa -5'
31231 5' -58.3 NC_006560.1 + 1294 0.66 0.783868
Target:  5'- -cGcCGGGCCGCccGGGUuccGCCCGcACGGc -3'
miRNA:   3'- uuCuGCCUGGCG--UCCA---UGGGC-UGCUa -5'
31231 5' -58.3 NC_006560.1 + 35671 0.66 0.783868
Target:  5'- gAGGAgGGGCCGCGGGgcgggggAgCCGGgGGg -3'
miRNA:   3'- -UUCUgCCUGGCGUCCa------UgGGCUgCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.