miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 34268 0.66 0.396671
Target:  5'- gCCCCgggcguaccgcgGGaCGGGGGUGUGcgcGCCUGUGu -3'
miRNA:   3'- -GGGGa-----------CC-GCCCCCGCGCu--CGGGCGCc -5'
31239 3' -68 NC_006560.1 + 65359 0.66 0.406018
Target:  5'- gCCCCgucGGCGGcGGCgGCGAaaaCGCGGa -3'
miRNA:   3'- -GGGGa--CCGCCcCCG-CGCUcggGCGCC- -5'
31239 3' -68 NC_006560.1 + 26706 0.66 0.413119
Target:  5'- gCCCgcgccgcgGGCGcgccGGGGUGCGAaccugggGCCgUGCGGa -3'
miRNA:   3'- gGGGa-------CCGC----CCCCGCGCU-------CGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 131155 0.66 0.406018
Target:  5'- gCCCCcGcGCGGcucuGGGCgGCG-GCcgCCGCGGg -3'
miRNA:   3'- -GGGGaC-CGCC----CCCG-CGCuCG--GGCGCC- -5'
31239 3' -68 NC_006560.1 + 18862 0.66 0.398219
Target:  5'- gCCUCUgGGCGGGGcCGCcgccccGCCCGCcguGGg -3'
miRNA:   3'- -GGGGA-CCGCCCCcGCGcu----CGGGCG---CC- -5'
31239 3' -68 NC_006560.1 + 20176 0.66 0.406018
Target:  5'- uUCUgaucGGCuGGGGGCGaCcGGCCCGgGGc -3'
miRNA:   3'- gGGGa---CCG-CCCCCGC-GcUCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 68453 0.66 0.398219
Target:  5'- gCCCUGGgGccGGCGCGGaCCCGCc- -3'
miRNA:   3'- gGGGACCgCccCCGCGCUcGGGCGcc -5'
31239 3' -68 NC_006560.1 + 34592 0.66 0.406018
Target:  5'- -aCC-GGCGGGGGgGgGcuccgggggguGGCCgCGCGGc -3'
miRNA:   3'- ggGGaCCGCCCCCgCgC-----------UCGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 5196 0.66 0.447242
Target:  5'- gCCCCgacGGCGGGGacaGCGCccGGGCCgucuccuccaccaugGCGGc -3'
miRNA:   3'- -GGGGa--CCGCCCC---CGCG--CUCGGg--------------CGCC- -5'
31239 3' -68 NC_006560.1 + 6587 0.66 0.398219
Target:  5'- gCUCggggGGaCGGGGGCucGgGGGCUCGgGGg -3'
miRNA:   3'- gGGGa---CC-GCCCCCG--CgCUCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 56268 0.66 0.411535
Target:  5'- uCUCC-GGUGGGGcGCGgGAaccgacacgccaccGCCaCGCGGc -3'
miRNA:   3'- -GGGGaCCGCCCC-CGCgCU--------------CGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 11733 0.66 0.406018
Target:  5'- gCCCCaGGCGcGGGGCccgcagcgGCGcGUCCG-GGu -3'
miRNA:   3'- -GGGGaCCGC-CCCCG--------CGCuCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 56963 0.66 0.406018
Target:  5'- uCCCCagcaUGGCGuacaGGGC-CG-GCCCGgGGg -3'
miRNA:   3'- -GGGG----ACCGCc---CCCGcGCuCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 5461 0.66 0.398219
Target:  5'- gCCCgggGGCGccGGGGCucCGAGCgcggUCGCGGc -3'
miRNA:   3'- gGGGa--CCGC--CCCCGc-GCUCG----GGCGCC- -5'
31239 3' -68 NC_006560.1 + 133131 0.66 0.406018
Target:  5'- aCCCCcGGUGGGcGGC-CuGGCC-GCGGc -3'
miRNA:   3'- -GGGGaCCGCCC-CCGcGcUCGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 131206 0.66 0.406018
Target:  5'- uCCCC-GGCGcu-GCGCcGGCCCGCGa -3'
miRNA:   3'- -GGGGaCCGCcccCGCGcUCGGGCGCc -5'
31239 3' -68 NC_006560.1 + 61534 0.66 0.406018
Target:  5'- -gCUgggGGCGGGGGCGgGGGCgCCaaacaGGg -3'
miRNA:   3'- ggGGa--CCGCCCCCGCgCUCG-GGcg---CC- -5'
31239 3' -68 NC_006560.1 + 110181 0.66 0.406018
Target:  5'- gCCgUGGCGGGguacuacguGGCGUGGaUCgCGCGGg -3'
miRNA:   3'- gGGgACCGCCC---------CCGCGCUcGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 142720 0.66 0.398219
Target:  5'- gCCCCgaGGCgcccgGGGGGCccgGCgGAGCCCGg-- -3'
miRNA:   3'- -GGGGa-CCG-----CCCCCG---CG-CUCGGGCgcc -5'
31239 3' -68 NC_006560.1 + 36182 0.66 0.398219
Target:  5'- cCCCCgguccgGGCucGGGGCuCGGGgCCGgGGu -3'
miRNA:   3'- -GGGGa-----CCGc-CCCCGcGCUCgGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.