Results 1 - 20 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31239 | 3' | -68 | NC_006560.1 | + | 5196 | 0.66 | 0.447242 |
Target: 5'- gCCCCgacGGCGGGGacaGCGCccGGGCCgucuccuccaccaugGCGGc -3' miRNA: 3'- -GGGGa--CCGCCCC---CGCG--CUCGGg--------------CGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 51785 | 0.79 | 0.060004 |
Target: 5'- cCCCCcGGCGGcGGGCGcCGGGaccguggcCCCGCGGu -3' miRNA: 3'- -GGGGaCCGCC-CCCGC-GCUC--------GGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 4543 | 0.78 | 0.061497 |
Target: 5'- gCCCCgggGGCGGGGGCuCG-GCCC-CGGg -3' miRNA: 3'- -GGGGa--CCGCCCCCGcGCuCGGGcGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 20905 | 0.78 | 0.063026 |
Target: 5'- uUCCCgGGCGGuGGGCGCGgagcgaggagGGCCgGCGGc -3' miRNA: 3'- -GGGGaCCGCC-CCCGCGC----------UCGGgCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 3293 | 0.78 | 0.069516 |
Target: 5'- gCCCgccgGGCGGgcGGGCgGUGAGCgCCGCGGg -3' miRNA: 3'- gGGGa---CCGCC--CCCG-CGCUCG-GGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 13571 | 0.78 | 0.071236 |
Target: 5'- gCUCC-GGCGGGGGCaGgGGGCCCccGCGGa -3' miRNA: 3'- -GGGGaCCGCCCCCG-CgCUCGGG--CGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 110287 | 0.77 | 0.074255 |
Target: 5'- cCCUCUGGUacGGGGGCGCG-GCCCucgucgcccuguugGCGGc -3' miRNA: 3'- -GGGGACCG--CCCCCGCGCuCGGG--------------CGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 22287 | 0.77 | 0.08047 |
Target: 5'- aCCCCgGGCGGcGcgccgcacgccGGCGaCGAGCUCGCGGa -3' miRNA: 3'- -GGGGaCCGCC-C-----------CCGC-GCUCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 85532 | 0.77 | 0.082449 |
Target: 5'- gCgCUUGGgGGGGGCGgGGgcGCCCGUGGg -3' miRNA: 3'- -GgGGACCgCCCCCGCgCU--CGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 32882 | 0.79 | 0.060004 |
Target: 5'- gCCCggggaggccGCGGGGGgGCGcGCCCGCGGg -3' miRNA: 3'- gGGGac-------CGCCCCCgCGCuCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 39583 | 0.79 | 0.055733 |
Target: 5'- gCCCagacgucGGUGGcGGGCGCGccGGCCCGCGGa -3' miRNA: 3'- -GGGga-----CCGCC-CCCGCGC--UCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 3413 | 0.79 | 0.054376 |
Target: 5'- gCgCCggcgggcgGGCGGcGGGCGCGGgcGCCCGCGGg -3' miRNA: 3'- -GgGGa-------CCGCC-CCCGCGCU--CGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 131370 | 0.87 | 0.014842 |
Target: 5'- cCCCCUGGCgcgGGGGGCGCGGuGCUgGCGGg -3' miRNA: 3'- -GGGGACCG---CCCCCGCGCU-CGGgCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 134189 | 0.84 | 0.02392 |
Target: 5'- -gCCUGGCGGaGcugcugcuGGCGCGGGCCCGCGGg -3' miRNA: 3'- ggGGACCGCC-C--------CCGCGCUCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 147906 | 0.82 | 0.031495 |
Target: 5'- aCCUCgcggGGCGGGGGCGgGggagagggGGCCCGCGGc -3' miRNA: 3'- -GGGGa---CCGCCCCCGCgC--------UCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 1966 | 0.82 | 0.036576 |
Target: 5'- cCCCCagGGCGGGGGCG-GGGCUCGgGGc -3' miRNA: 3'- -GGGGa-CCGCCCCCGCgCUCGGGCgCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 104771 | 0.81 | 0.038442 |
Target: 5'- gCCCCgGGCGGGGGCGCGGGggggaGCGGu -3' miRNA: 3'- -GGGGaCCGCCCCCGCGCUCggg--CGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 114330 | 0.8 | 0.046883 |
Target: 5'- gCCCCUGcaacccGCGGGGGCGCGcGGCCgggggcgcguaCGCGGg -3' miRNA: 3'- -GGGGAC------CGCCCCCGCGC-UCGG-----------GCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 131104 | 0.8 | 0.051758 |
Target: 5'- gCCCacgccgagCUGGCGGGGGC-CuGGCCCGCGGc -3' miRNA: 3'- -GGG--------GACCGCCCCCGcGcUCGGGCGCC- -5' |
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31239 | 3' | -68 | NC_006560.1 | + | 26490 | 0.79 | 0.053051 |
Target: 5'- gCCCC-GGCGGGGG-GCGGGCgCGCGa -3' miRNA: 3'- -GGGGaCCGCCCCCgCGCUCGgGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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