miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 667 0.7 0.236156
Target:  5'- aCCCC-GGCGcgcccGcGGCGCGGGCUcguCGCGGg -3'
miRNA:   3'- -GGGGaCCGCc----C-CCGCGCUCGG---GCGCC- -5'
31239 3' -68 NC_006560.1 + 1093 0.7 0.236156
Target:  5'- gCCCgccaGGCuccccGGcGGCGCGAGCcCCGCGa -3'
miRNA:   3'- gGGGa---CCGc----CC-CCGCGCUCG-GGCGCc -5'
31239 3' -68 NC_006560.1 + 1206 0.69 0.275103
Target:  5'- aCCCCaGGCuccccGGGGGCG-GGGCCCcugccGCGc -3'
miRNA:   3'- -GGGGaCCG-----CCCCCGCgCUCGGG-----CGCc -5'
31239 3' -68 NC_006560.1 + 1251 0.71 0.216045
Target:  5'- gCCCC-GGCGGGGccccCGCGAagccCCCGCGa -3'
miRNA:   3'- -GGGGaCCGCCCCc---GCGCUc---GGGCGCc -5'
31239 3' -68 NC_006560.1 + 1332 0.69 0.262905
Target:  5'- cCCCCgGGCGcccgacGGGaccgugcGCGCGGGuccCCCGCGGc -3'
miRNA:   3'- -GGGGaCCGC------CCC-------CGCGCUC---GGGCGCC- -5'
31239 3' -68 NC_006560.1 + 1499 0.67 0.359972
Target:  5'- gCCCaCgccGGCGGGaGCGCGugcaucgGGCCC-CGGg -3'
miRNA:   3'- -GGG-Ga--CCGCCCcCGCGC-------UCGGGcGCC- -5'
31239 3' -68 NC_006560.1 + 1864 0.74 0.13005
Target:  5'- gUCgCgGGCGGGGGuCGCGGGCgggggUCGCGGg -3'
miRNA:   3'- -GGgGaCCGCCCCC-GCGCUCG-----GGCGCC- -5'
31239 3' -68 NC_006560.1 + 1966 0.82 0.036576
Target:  5'- cCCCCagGGCGGGGGCG-GGGCUCGgGGc -3'
miRNA:   3'- -GGGGa-CCGCCCCCGCgCUCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 2186 0.66 0.429982
Target:  5'- gCCUCgGGCccGGcGCGCGcGGCCgCGCGGu -3'
miRNA:   3'- -GGGGaCCGccCC-CGCGC-UCGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 2840 0.68 0.332501
Target:  5'- gCCCaGGCGGccGUGuCGGGCCCGCa- -3'
miRNA:   3'- gGGGaCCGCCccCGC-GCUCGGGCGcc -5'
31239 3' -68 NC_006560.1 + 3019 0.67 0.360697
Target:  5'- aUCCaGGCGGcGGCGCGgcgcagcgGGCCCgaggcGCGGa -3'
miRNA:   3'- gGGGaCCGCCcCCGCGC--------UCGGG-----CGCC- -5'
31239 3' -68 NC_006560.1 + 3254 0.7 0.257814
Target:  5'- gCCCgGGCGGcgcgcGGCGCcAGCcgCCGCGGg -3'
miRNA:   3'- gGGGaCCGCCc----CCGCGcUCG--GGCGCC- -5'
31239 3' -68 NC_006560.1 + 3293 0.78 0.069516
Target:  5'- gCCCgccgGGCGGgcGGGCgGUGAGCgCCGCGGg -3'
miRNA:   3'- gGGGa---CCGCC--CCCG-CGCUCG-GGCGCC- -5'
31239 3' -68 NC_006560.1 + 3324 0.69 0.263476
Target:  5'- ----nGGcCGGGGGCGCGGGCggGCGGc -3'
miRNA:   3'- ggggaCC-GCCCCCGCGCUCGggCGCC- -5'
31239 3' -68 NC_006560.1 + 3382 0.68 0.332501
Target:  5'- ----gGGCGGgcGGGCGCGGGCCgGCu- -3'
miRNA:   3'- ggggaCCGCC--CCCGCGCUCGGgCGcc -5'
31239 3' -68 NC_006560.1 + 3413 0.79 0.054376
Target:  5'- gCgCCggcgggcgGGCGGcGGGCGCGGgcGCCCGCGGg -3'
miRNA:   3'- -GgGGa-------CCGCC-CCCGCGCU--CGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 3737 0.66 0.441445
Target:  5'- -gCCaGGCGcGcGGGCGCGGcgcgggcgcggcggcGCCgCGCGGc -3'
miRNA:   3'- ggGGaCCGC-C-CCCGCGCU---------------CGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 3920 0.7 0.257814
Target:  5'- cCCCCUccuccgccGCGGGGGCgGCGccgcGGUCgGCGGc -3'
miRNA:   3'- -GGGGAc-------CGCCCCCG-CGC----UCGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 3967 0.68 0.32571
Target:  5'- gCCgCCaGGCGGcGcuGCGCGGcgacacGCCCGCGGc -3'
miRNA:   3'- -GG-GGaCCGCC-Cc-CGCGCU------CGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 4037 0.73 0.149743
Target:  5'- gUCCCggGGCGGcGGCGCGGcGCcggCCGCGGc -3'
miRNA:   3'- -GGGGa-CCGCCcCCGCGCU-CG---GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.