miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 16293 0.87 0.014113
Target:  5'- aCCCCUGGgGcgcggcGGGGCGCGGGCCCGCGc -3'
miRNA:   3'- -GGGGACCgC------CCCCGCGCUCGGGCGCc -5'
31239 3' -68 NC_006560.1 + 131370 0.87 0.014842
Target:  5'- cCCCCUGGCgcgGGGGGCGCGGuGCUgGCGGg -3'
miRNA:   3'- -GGGGACCG---CCCCCGCGCU-CGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 134189 0.84 0.02392
Target:  5'- -gCCUGGCGGaGcugcugcuGGCGCGGGCCCGCGGg -3'
miRNA:   3'- ggGGACCGCC-C--------CCGCGCUCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 147906 0.82 0.031495
Target:  5'- aCCUCgcggGGCGGGGGCGgGggagagggGGCCCGCGGc -3'
miRNA:   3'- -GGGGa---CCGCCCCCGCgC--------UCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 1966 0.82 0.036576
Target:  5'- cCCCCagGGCGGGGGCG-GGGCUCGgGGc -3'
miRNA:   3'- -GGGGa-CCGCCCCCGCgCUCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 104771 0.81 0.038442
Target:  5'- gCCCCgGGCGGGGGCGCGGGggggaGCGGu -3'
miRNA:   3'- -GGGGaCCGCCCCCGCGCUCggg--CGCC- -5'
31239 3' -68 NC_006560.1 + 114330 0.8 0.046883
Target:  5'- gCCCCUGcaacccGCGGGGGCGCGcGGCCgggggcgcguaCGCGGg -3'
miRNA:   3'- -GGGGAC------CGCCCCCGCGC-UCGG-----------GCGCC- -5'
31239 3' -68 NC_006560.1 + 131104 0.8 0.051758
Target:  5'- gCCCacgccgagCUGGCGGGGGC-CuGGCCCGCGGc -3'
miRNA:   3'- -GGG--------GACCGCCCCCGcGcUCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 26490 0.79 0.053051
Target:  5'- gCCCC-GGCGGGGG-GCGGGCgCGCGa -3'
miRNA:   3'- -GGGGaCCGCCCCCgCGCUCGgGCGCc -5'
31239 3' -68 NC_006560.1 + 3413 0.79 0.054376
Target:  5'- gCgCCggcgggcgGGCGGcGGGCGCGGgcGCCCGCGGg -3'
miRNA:   3'- -GgGGa-------CCGCC-CCCGCGCU--CGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 39583 0.79 0.055733
Target:  5'- gCCCagacgucGGUGGcGGGCGCGccGGCCCGCGGa -3'
miRNA:   3'- -GGGga-----CCGCC-CCCGCGC--UCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 32882 0.79 0.060004
Target:  5'- gCCCggggaggccGCGGGGGgGCGcGCCCGCGGg -3'
miRNA:   3'- gGGGac-------CGCCCCCgCGCuCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 51785 0.79 0.060004
Target:  5'- cCCCCcGGCGGcGGGCGcCGGGaccguggcCCCGCGGu -3'
miRNA:   3'- -GGGGaCCGCC-CCCGC-GCUC--------GGGCGCC- -5'
31239 3' -68 NC_006560.1 + 4543 0.78 0.061497
Target:  5'- gCCCCgggGGCGGGGGCuCG-GCCC-CGGg -3'
miRNA:   3'- -GGGGa--CCGCCCCCGcGCuCGGGcGCC- -5'
31239 3' -68 NC_006560.1 + 20905 0.78 0.063026
Target:  5'- uUCCCgGGCGGuGGGCGCGgagcgaggagGGCCgGCGGc -3'
miRNA:   3'- -GGGGaCCGCC-CCCGCGC----------UCGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 3293 0.78 0.069516
Target:  5'- gCCCgccgGGCGGgcGGGCgGUGAGCgCCGCGGg -3'
miRNA:   3'- gGGGa---CCGCC--CCCG-CGCUCG-GGCGCC- -5'
31239 3' -68 NC_006560.1 + 13571 0.78 0.071236
Target:  5'- gCUCC-GGCGGGGGCaGgGGGCCCccGCGGa -3'
miRNA:   3'- -GGGGaCCGCCCCCG-CgCUCGGG--CGCC- -5'
31239 3' -68 NC_006560.1 + 110287 0.77 0.074255
Target:  5'- cCCUCUGGUacGGGGGCGCG-GCCCucgucgcccuguugGCGGc -3'
miRNA:   3'- -GGGGACCG--CCCCCGCGCuCGGG--------------CGCC- -5'
31239 3' -68 NC_006560.1 + 22287 0.77 0.08047
Target:  5'- aCCCCgGGCGGcGcgccgcacgccGGCGaCGAGCUCGCGGa -3'
miRNA:   3'- -GGGGaCCGCC-C-----------CCGC-GCUCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 85532 0.77 0.082449
Target:  5'- gCgCUUGGgGGGGGCGgGGgcGCCCGUGGg -3'
miRNA:   3'- -GgGGACCgCCCCCGCgCU--CGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.