miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 86775 0.66 0.913784
Target:  5'- cCGaCGUGGGGUCga-G-CACCUugGCg -3'
miRNA:   3'- -GCgGCGCCCUAGaugCaGUGGAugUG- -5'
31239 5' -55.8 NC_006560.1 + 105046 0.66 0.900954
Target:  5'- cCGCCGCGGGGggggugcUCUGCuugCuCCU-CGCg -3'
miRNA:   3'- -GCGGCGCCCU-------AGAUGca-GuGGAuGUG- -5'
31239 5' -55.8 NC_006560.1 + 45245 0.66 0.907803
Target:  5'- gGCCGgGGGG---GCGUCugUgGCGCg -3'
miRNA:   3'- gCGGCgCCCUagaUGCAGugGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 115279 0.66 0.913784
Target:  5'- aCGCaCGCGGGcaccGCGa-GCCUGCGCa -3'
miRNA:   3'- -GCG-GCGCCCuagaUGCagUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 2077 0.66 0.907803
Target:  5'- gGCgGCGGGGUCcgggggcccgGCGUCGgC-GCGCa -3'
miRNA:   3'- gCGgCGCCCUAGa---------UGCAGUgGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 74798 0.66 0.918965
Target:  5'- gCGCUGCGGGAcCUguuccccGCGgCGCCcgagACGCc -3'
miRNA:   3'- -GCGGCGCCCUaGA-------UGCaGUGGa---UGUG- -5'
31239 5' -55.8 NC_006560.1 + 76060 0.66 0.918965
Target:  5'- cCGCCGCGGcGGaacugguUCgcaccgGCGUCGCCcugGCGu -3'
miRNA:   3'- -GCGGCGCC-CU-------AGa-----UGCAGUGGa--UGUg -5'
31239 5' -55.8 NC_006560.1 + 42573 0.66 0.919529
Target:  5'- cCGCCGCGGcGG-CcACGUCcgccGCCgagagACGCg -3'
miRNA:   3'- -GCGGCGCC-CUaGaUGCAG----UGGa----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 46003 0.66 0.919529
Target:  5'- gGCCGuCGGGggC-GCGUgCACCaccGCGCa -3'
miRNA:   3'- gCGGC-GCCCuaGaUGCA-GUGGa--UGUG- -5'
31239 5' -55.8 NC_006560.1 + 134675 0.66 0.913784
Target:  5'- cCGCCgGCGGGGUC-GCGgaccCGCCacuCGCc -3'
miRNA:   3'- -GCGG-CGCCCUAGaUGCa---GUGGau-GUG- -5'
31239 5' -55.8 NC_006560.1 + 91555 0.66 0.925036
Target:  5'- aCGCCgGCGGGccCUGCccgCugCUGCAg -3'
miRNA:   3'- -GCGG-CGCCCuaGAUGca-GugGAUGUg -5'
31239 5' -55.8 NC_006560.1 + 61635 0.66 0.919529
Target:  5'- cCGCCGCGuccaGGAUCcgGCuGUCgGCCgGCGCc -3'
miRNA:   3'- -GCGGCGC----CCUAGa-UG-CAG-UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 134418 0.66 0.913784
Target:  5'- cCGCC-CGGGAg--GCGUCGuCCU-CGCc -3'
miRNA:   3'- -GCGGcGCCCUagaUGCAGU-GGAuGUG- -5'
31239 5' -55.8 NC_006560.1 + 33786 0.66 0.919529
Target:  5'- gGCCGUGGGGcgcgCgaaGUCGCggGCGCg -3'
miRNA:   3'- gCGGCGCCCUa---GaugCAGUGgaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 140502 0.66 0.907803
Target:  5'- gGCgGCGGGGgagaagggCUGCGgggccgcuucaUCGCCggGCGCg -3'
miRNA:   3'- gCGgCGCCCUa-------GAUGC-----------AGUGGa-UGUG- -5'
31239 5' -55.8 NC_006560.1 + 57886 0.66 0.913784
Target:  5'- -cCCGCGGG-UCUuccGCGUCcACCgccGCGCc -3'
miRNA:   3'- gcGGCGCCCuAGA---UGCAG-UGGa--UGUG- -5'
31239 5' -55.8 NC_006560.1 + 39068 0.66 0.901589
Target:  5'- uCGCCGCGGcg-CUGCGgccgaacgucUCGCUgACGCg -3'
miRNA:   3'- -GCGGCGCCcuaGAUGC----------AGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 3752 0.66 0.919529
Target:  5'- gCGgCGCGGGcgCgGCGgCGCC-GCGCg -3'
miRNA:   3'- -GCgGCGCCCuaGaUGCaGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 119520 0.66 0.919529
Target:  5'- gGCCGCGGGG-CcGCG-CGCUaaGCGCg -3'
miRNA:   3'- gCGGCGCCCUaGaUGCaGUGGa-UGUG- -5'
31239 5' -55.8 NC_006560.1 + 15268 0.66 0.913784
Target:  5'- aCGCCGgGGGcgCggucGCGggaGCCgGCGCg -3'
miRNA:   3'- -GCGGCgCCCuaGa---UGCag-UGGaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.