Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31239 | 5' | -55.8 | NC_006560.1 | + | 108769 | 0.77 | 0.37927 |
Target: 5'- aGCCGCGGGAg----GUgGCCUGCACg -3' miRNA: 3'- gCGGCGCCCUagaugCAgUGGAUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 42692 | 0.76 | 0.395932 |
Target: 5'- gGCaGCGGGGUCUGCGUCcgGCCgucuCGCg -3' miRNA: 3'- gCGgCGCCCUAGAUGCAG--UGGau--GUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 23391 | 0.75 | 0.457801 |
Target: 5'- gCGCCGCGGGcgU--CGUCGCC-GCGCa -3' miRNA: 3'- -GCGGCGCCCuaGauGCAGUGGaUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 8951 | 0.75 | 0.476412 |
Target: 5'- gCGCCGCGGGG-CgccgACGUCAUguaaUACGCa -3' miRNA: 3'- -GCGGCGCCCUaGa---UGCAGUGg---AUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 36603 | 0.74 | 0.505008 |
Target: 5'- aGCCGCucGGAUCUGCGUCugCc-CGCg -3' miRNA: 3'- gCGGCGc-CCUAGAUGCAGugGauGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 22629 | 0.74 | 0.513731 |
Target: 5'- cCGCCGCGGGccgccgccgagacggGCGUCGCCgccggGCGCa -3' miRNA: 3'- -GCGGCGCCCuaga-----------UGCAGUGGa----UGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 2577 | 0.73 | 0.544224 |
Target: 5'- gCGCgGCGGGccagCggACGUCGCaCUGCGCg -3' miRNA: 3'- -GCGgCGCCCua--Ga-UGCAGUG-GAUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 74121 | 0.73 | 0.564207 |
Target: 5'- aCGCCGCGGGccaggggCU-CGUCGCCcGCAa -3' miRNA: 3'- -GCGGCGCCCua-----GAuGCAGUGGaUGUg -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 68809 | 0.73 | 0.574272 |
Target: 5'- gGaCCGCGGGAUCgugGCGcccccgCGCCUGCuCg -3' miRNA: 3'- gC-GGCGCCCUAGa--UGCa-----GUGGAUGuG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 18796 | 0.73 | 0.584379 |
Target: 5'- gGCCGCGGGAcgccgUC-GCGUCgcGCCcACGCg -3' miRNA: 3'- gCGGCGCCCU-----AGaUGCAG--UGGaUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 23760 | 0.72 | 0.594519 |
Target: 5'- gCGCCGUGGGc-CU-CGUCGCCgGCGCc -3' miRNA: 3'- -GCGGCGCCCuaGAuGCAGUGGaUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 34738 | 0.72 | 0.604687 |
Target: 5'- uCGCCGCGGcGGcCcgcGCGUCGCCU-CGCg -3' miRNA: 3'- -GCGGCGCC-CUaGa--UGCAGUGGAuGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 123694 | 0.72 | 0.625077 |
Target: 5'- -cCCGCGuGGAUCcgcCGcCACCUACGCa -3' miRNA: 3'- gcGGCGC-CCUAGau-GCaGUGGAUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 65067 | 0.71 | 0.654662 |
Target: 5'- gGCCGCGGGugccgaugggucgGUCUGCGUUGCgaucgACACc -3' miRNA: 3'- gCGGCGCCC-------------UAGAUGCAGUGga---UGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 124118 | 0.71 | 0.655681 |
Target: 5'- uCGCCGCGGGGcacccacgGCGUCGCg-GCGCc -3' miRNA: 3'- -GCGGCGCCCUaga-----UGCAGUGgaUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 25097 | 0.71 | 0.665856 |
Target: 5'- cCGCCGCGGcGAg--GCGcacucgcaccgCGCCUGCGCg -3' miRNA: 3'- -GCGGCGCC-CUagaUGCa----------GUGGAUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 101768 | 0.71 | 0.665856 |
Target: 5'- gCGUCGCGGGG-C-ACGUCGCCggggGCGg -3' miRNA: 3'- -GCGGCGCCCUaGaUGCAGUGGa---UGUg -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 14303 | 0.71 | 0.676003 |
Target: 5'- gCGCCG-GGGAggaggUugGUCACCaGCGCg -3' miRNA: 3'- -GCGGCgCCCUag---AugCAGUGGaUGUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 43134 | 0.71 | 0.676003 |
Target: 5'- gGCCGCGGGGUCgGgGUCGCgagucguCACg -3' miRNA: 3'- gCGGCGCCCUAGaUgCAGUGgau----GUG- -5' |
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31239 | 5' | -55.8 | NC_006560.1 | + | 131648 | 0.7 | 0.706197 |
Target: 5'- gCGCCGCGcuGGAgg-GCGUCGCCgGCGa -3' miRNA: 3'- -GCGGCGC--CCUagaUGCAGUGGaUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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