miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 91555 0.66 0.925036
Target:  5'- aCGCCgGCGGGccCUGCccgCugCUGCAg -3'
miRNA:   3'- -GCGG-CGCCCuaGAUGca-GugGAUGUg -5'
31239 5' -55.8 NC_006560.1 + 123694 0.72 0.625077
Target:  5'- -cCCGCGuGGAUCcgcCGcCACCUACGCa -3'
miRNA:   3'- gcGGCGC-CCUAGau-GCaGUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 65067 0.71 0.654662
Target:  5'- gGCCGCGGGugccgaugggucgGUCUGCGUUGCgaucgACACc -3'
miRNA:   3'- gCGGCGCCC-------------UAGAUGCAGUGga---UGUG- -5'
31239 5' -55.8 NC_006560.1 + 124118 0.71 0.655681
Target:  5'- uCGCCGCGGGGcacccacgGCGUCGCg-GCGCc -3'
miRNA:   3'- -GCGGCGCCCUaga-----UGCAGUGgaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 101768 0.71 0.665856
Target:  5'- gCGUCGCGGGG-C-ACGUCGCCggggGCGg -3'
miRNA:   3'- -GCGGCGCCCUaGaUGCAGUGGa---UGUg -5'
31239 5' -55.8 NC_006560.1 + 25097 0.71 0.665856
Target:  5'- cCGCCGCGGcGAg--GCGcacucgcaccgCGCCUGCGCg -3'
miRNA:   3'- -GCGGCGCC-CUagaUGCa----------GUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 14303 0.71 0.676003
Target:  5'- gCGCCG-GGGAggaggUugGUCACCaGCGCg -3'
miRNA:   3'- -GCGGCgCCCUag---AugCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 43134 0.71 0.676003
Target:  5'- gGCCGCGGGGUCgGgGUCGCgagucguCACg -3'
miRNA:   3'- gCGGCGCCCUAGaUgCAGUGgau----GUG- -5'
31239 5' -55.8 NC_006560.1 + 51421 0.7 0.706197
Target:  5'- uCGCCGCGG--UCUACG-CG-CUGCACa -3'
miRNA:   3'- -GCGGCGCCcuAGAUGCaGUgGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 34738 0.72 0.604687
Target:  5'- uCGCCGCGGcGGcCcgcGCGUCGCCU-CGCg -3'
miRNA:   3'- -GCGGCGCC-CUaGa--UGCAGUGGAuGUG- -5'
31239 5' -55.8 NC_006560.1 + 23760 0.72 0.594519
Target:  5'- gCGCCGUGGGc-CU-CGUCGCCgGCGCc -3'
miRNA:   3'- -GCGGCGCCCuaGAuGCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 18796 0.73 0.584379
Target:  5'- gGCCGCGGGAcgccgUC-GCGUCgcGCCcACGCg -3'
miRNA:   3'- gCGGCGCCCU-----AGaUGCAG--UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 42692 0.76 0.395932
Target:  5'- gGCaGCGGGGUCUGCGUCcgGCCgucuCGCg -3'
miRNA:   3'- gCGgCGCCCUAGAUGCAG--UGGau--GUG- -5'
31239 5' -55.8 NC_006560.1 + 23391 0.75 0.457801
Target:  5'- gCGCCGCGGGcgU--CGUCGCC-GCGCa -3'
miRNA:   3'- -GCGGCGCCCuaGauGCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 8951 0.75 0.476412
Target:  5'- gCGCCGCGGGG-CgccgACGUCAUguaaUACGCa -3'
miRNA:   3'- -GCGGCGCCCUaGa---UGCAGUGg---AUGUG- -5'
31239 5' -55.8 NC_006560.1 + 36603 0.74 0.505008
Target:  5'- aGCCGCucGGAUCUGCGUCugCc-CGCg -3'
miRNA:   3'- gCGGCGc-CCUAGAUGCAGugGauGUG- -5'
31239 5' -55.8 NC_006560.1 + 22629 0.74 0.513731
Target:  5'- cCGCCGCGGGccgccgccgagacggGCGUCGCCgccggGCGCa -3'
miRNA:   3'- -GCGGCGCCCuaga-----------UGCAGUGGa----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 2577 0.73 0.544224
Target:  5'- gCGCgGCGGGccagCggACGUCGCaCUGCGCg -3'
miRNA:   3'- -GCGgCGCCCua--Ga-UGCAGUG-GAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 74121 0.73 0.564207
Target:  5'- aCGCCGCGGGccaggggCU-CGUCGCCcGCAa -3'
miRNA:   3'- -GCGGCGCCCua-----GAuGCAGUGGaUGUg -5'
31239 5' -55.8 NC_006560.1 + 68809 0.73 0.574272
Target:  5'- gGaCCGCGGGAUCgugGCGcccccgCGCCUGCuCg -3'
miRNA:   3'- gC-GGCGCCCUAGa--UGCa-----GUGGAUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.