miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 540 0.69 0.792428
Target:  5'- gGCCGCGccccGGGUCcccgGCGUCcCCcGCGCg -3'
miRNA:   3'- gCGGCGC----CCUAGa---UGCAGuGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 2077 0.66 0.907803
Target:  5'- gGCgGCGGGGUCcgggggcccgGCGUCGgC-GCGCa -3'
miRNA:   3'- gCGgCGCCCUAGa---------UGCAGUgGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 2577 0.73 0.544224
Target:  5'- gCGCgGCGGGccagCggACGUCGCaCUGCGCg -3'
miRNA:   3'- -GCGgCGCCCua--Ga-UGCAGUG-GAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 3580 0.66 0.913784
Target:  5'- uGCCGCGGG--CUGCGg-GCCaGCAg -3'
miRNA:   3'- gCGGCGCCCuaGAUGCagUGGaUGUg -5'
31239 5' -55.8 NC_006560.1 + 3661 0.68 0.835731
Target:  5'- gCGCCGcCGGGGaCgcggAgGUCGCCgcgcagGCGCa -3'
miRNA:   3'- -GCGGC-GCCCUaGa---UgCAGUGGa-----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 3752 0.66 0.919529
Target:  5'- gCGgCGCGGGcgCgGCGgCGCC-GCGCg -3'
miRNA:   3'- -GCgGCGCCCuaGaUGCaGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 5096 0.67 0.887106
Target:  5'- gCGCCGCccGGGGUCggcgggggcgcgGCGUCgaugACCcACACc -3'
miRNA:   3'- -GCGGCG--CCCUAGa-----------UGCAG----UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 7240 0.7 0.73583
Target:  5'- aGCCGCGGGuAUCggcccgACGccCGCgUGCGCc -3'
miRNA:   3'- gCGGCGCCC-UAGa-----UGCa-GUGgAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 7314 0.68 0.847073
Target:  5'- uGCCGCGGGGgcguggagaugcgcgUCUA--UCGCCgGCGCc -3'
miRNA:   3'- gCGGCGCCCU---------------AGAUgcAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 8951 0.75 0.476412
Target:  5'- gCGCCGCGGGG-CgccgACGUCAUguaaUACGCa -3'
miRNA:   3'- -GCGGCGCCCUaGa---UGCAGUGg---AUGUG- -5'
31239 5' -55.8 NC_006560.1 + 10680 0.66 0.92009
Target:  5'- gCGCCccGCGGGAaggUCgaagaacaccacguCGUCGCCgGCGCu -3'
miRNA:   3'- -GCGG--CGCCCU---AGau------------GCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 11692 0.67 0.881568
Target:  5'- gGCgGgCGGGAUCgGCGUCGCggGgACg -3'
miRNA:   3'- gCGgC-GCCCUAGaUGCAGUGgaUgUG- -5'
31239 5' -55.8 NC_006560.1 + 12558 0.69 0.792428
Target:  5'- gCGCCGuCGGGGUCU-CGUCgagcaGCUggggcagGCGCa -3'
miRNA:   3'- -GCGGC-GCCCUAGAuGCAG-----UGGa------UGUG- -5'
31239 5' -55.8 NC_006560.1 + 14303 0.71 0.676003
Target:  5'- gCGCCG-GGGAggaggUugGUCACCaGCGCg -3'
miRNA:   3'- -GCGGCgCCCUag---AugCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 15268 0.66 0.913784
Target:  5'- aCGCCGgGGGcgCggucGCGggaGCCgGCGCg -3'
miRNA:   3'- -GCGGCgCCCuaGa---UGCag-UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 16388 0.69 0.783303
Target:  5'- gCGgCGCGGGcgg-GCGUCGCCUGgagcCGCg -3'
miRNA:   3'- -GCgGCGCCCuagaUGCAGUGGAU----GUG- -5'
31239 5' -55.8 NC_006560.1 + 18107 0.67 0.881568
Target:  5'- gGUCGCGGcGuUCUGCGUCcgggGCC-GCGCc -3'
miRNA:   3'- gCGGCGCC-CuAGAUGCAG----UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 18796 0.73 0.584379
Target:  5'- gGCCGCGGGAcgccgUC-GCGUCgcGCCcACGCg -3'
miRNA:   3'- gCGGCGCCCU-----AGaUGCAG--UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 22188 0.67 0.881568
Target:  5'- cCGCCGuCGGGGcCgcCGUCGCCgcgGCcCg -3'
miRNA:   3'- -GCGGC-GCCCUaGauGCAGUGGa--UGuG- -5'
31239 5' -55.8 NC_006560.1 + 22629 0.74 0.513731
Target:  5'- cCGCCGCGGGccgccgccgagacggGCGUCGCCgccggGCGCa -3'
miRNA:   3'- -GCGGCGCCCuaga-----------UGCAGUGGa----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.