miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31244 5' -67.8 NC_006560.1 + 95937 0.66 0.394839
Target:  5'- aGC-ACcUGGCCCCcaagcucgcgGCCggCGGGCCGGAg -3'
miRNA:   3'- cCGcUGaGCCGGGG----------CGG--GCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 79844 0.66 0.402632
Target:  5'- cGGCGGCgCGGa-CCGagCCGGGCCGc- -3'
miRNA:   3'- -CCGCUGaGCCggGGCg-GGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 79883 0.66 0.402632
Target:  5'- -aCGcCUCGGCaCCCGCCCGuucGCCGc- -3'
miRNA:   3'- ccGCuGAGCCG-GGGCGGGCc--CGGCcu -5'
31244 5' -67.8 NC_006560.1 + 80844 0.66 0.402632
Target:  5'- cGCGcCUaggGGCUgCGCgCGGGCUGGGc -3'
miRNA:   3'- cCGCuGAg--CCGGgGCGgGCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 14877 0.66 0.394839
Target:  5'- gGGCGgggagaGgUCGuuCCCggGCCCGGGUCGGGg -3'
miRNA:   3'- -CCGC------UgAGCcgGGG--CGGGCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 81274 0.66 0.402632
Target:  5'- gGGCacACUggCGGCCCgGCggCCGGGCCGc- -3'
miRNA:   3'- -CCGc-UGA--GCCGGGgCG--GGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 56398 0.66 0.394839
Target:  5'- gGGU-ACgguuGCCCCGCgCgGGGCCGGGg -3'
miRNA:   3'- -CCGcUGagc-CGGGGCG-GgCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 81433 0.66 0.394065
Target:  5'- gGGcCGGggCGGCCCCGgUCGcggcgucgggcgcGGCCGGGa -3'
miRNA:   3'- -CC-GCUgaGCCGGGGCgGGC-------------CCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 26698 0.66 0.394839
Target:  5'- cGCGACga-GCCCgCGCCgCGGgcgcGCCGGGg -3'
miRNA:   3'- cCGCUGagcCGGG-GCGG-GCC----CGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 43746 0.66 0.402632
Target:  5'- cGCGGC-CGccgcggugcGCCCCGUgCgCGGGCCGGc -3'
miRNA:   3'- cCGCUGaGC---------CGGGGCG-G-GCCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 38086 0.66 0.394839
Target:  5'- gGGUGugUCGGUgCCGCggguuuCUGGGgCGGc -3'
miRNA:   3'- -CCGCugAGCCGgGGCG------GGCCCgGCCu -5'
31244 5' -67.8 NC_006560.1 + 135217 0.66 0.443014
Target:  5'- uGGCGGgucgCGGCCUCG-CUGGaCCGGAc -3'
miRNA:   3'- -CCGCUga--GCCGGGGCgGGCCcGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 92 0.66 0.402632
Target:  5'- cGCGcCcCGcGCCCCGCCCccgcGGCCGcGGc -3'
miRNA:   3'- cCGCuGaGC-CGGGGCGGGc---CCGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 52230 0.66 0.394839
Target:  5'- uGGCGAg-CuGCCUgGCCCcGGCCGGc -3'
miRNA:   3'- -CCGCUgaGcCGGGgCGGGcCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 144800 0.66 0.402632
Target:  5'- cGGCGGCUaccccgcgggCGcGCCCC-CCCGcGGCCu-- -3'
miRNA:   3'- -CCGCUGA----------GC-CGGGGcGGGC-CCGGccu -5'
31244 5' -67.8 NC_006560.1 + 80139 0.66 0.394839
Target:  5'- cGUGGCUCGGggcaCUgGuCCCGGGgCGGGu -3'
miRNA:   3'- cCGCUGAGCCg---GGgC-GGGCCCgGCCU- -5'
31244 5' -67.8 NC_006560.1 + 118050 0.66 0.394839
Target:  5'- gGGCgGGCcCGGCgCCGCCgCGGGCg--- -3'
miRNA:   3'- -CCG-CUGaGCCGgGGCGG-GCCCGgccu -5'
31244 5' -67.8 NC_006560.1 + 82136 0.66 0.394839
Target:  5'- gGGUGugUCGGCgCCgaGCgCGGGCUacccccgcaGGAu -3'
miRNA:   3'- -CCGCugAGCCG-GGg-CGgGCCCGG---------CCU- -5'
31244 5' -67.8 NC_006560.1 + 1613 0.66 0.402632
Target:  5'- cGGCGcgcGCUCugcgGGCUUCGCgCCugucuguggcgGGGCCGGGg -3'
miRNA:   3'- -CCGC---UGAG----CCGGGGCG-GG-----------CCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 26764 0.66 0.402632
Target:  5'- uGCGAUUCGaaCCCgcgUGCCCGcGGCgCGGAg -3'
miRNA:   3'- cCGCUGAGCc-GGG---GCGGGC-CCG-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.