miRNA display CGI


Results 1 - 20 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31244 5' -67.8 NC_006560.1 + 92 0.66 0.402632
Target:  5'- cGCGcCcCGcGCCCCGCCCccgcGGCCGcGGc -3'
miRNA:   3'- cCGCuGaGC-CGGGGCGGGc---CCGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 136 0.7 0.238534
Target:  5'- gGGCGggGC-CGGCCCCGCCCcGcGGucCCGGc -3'
miRNA:   3'- -CCGC--UGaGCCGGGGCGGG-C-CC--GGCCu -5'
31244 5' -67.8 NC_006560.1 + 219 0.66 0.410521
Target:  5'- cGCGGgagGGCCCgGCCCGcGGCuCGGu -3'
miRNA:   3'- cCGCUgagCCGGGgCGGGC-CCG-GCCu -5'
31244 5' -67.8 NC_006560.1 + 532 0.74 0.124999
Target:  5'- cGGCGGC-CGGCCgCGCCCcGGGuccCCGGc -3'
miRNA:   3'- -CCGCUGaGCCGGgGCGGG-CCC---GGCCu -5'
31244 5' -67.8 NC_006560.1 + 732 0.66 0.413703
Target:  5'- cGCGGCcccguccccccccgCGGCCCCGuccccccccCCCGcGGCgCGGGu -3'
miRNA:   3'- cCGCUGa-------------GCCGGGGC---------GGGC-CCG-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 984 0.69 0.272047
Target:  5'- cGGgGGCgCGcCCCuCGCCCcGGCCGGGg -3'
miRNA:   3'- -CCgCUGaGCcGGG-GCGGGcCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 1108 0.69 0.295796
Target:  5'- cGGCGGCgCGaGCCCCGCgacgcgccccccuCCGGcCCGGc -3'
miRNA:   3'- -CCGCUGaGC-CGGGGCG-------------GGCCcGGCCu -5'
31244 5' -67.8 NC_006560.1 + 1490 0.66 0.434754
Target:  5'- aGGCG-CgCGGCCCaCGCC--GGCgGGAg -3'
miRNA:   3'- -CCGCuGaGCCGGG-GCGGgcCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 1613 0.66 0.402632
Target:  5'- cGGCGcgcGCUCugcgGGCUUCGCgCCugucuguggcgGGGCCGGGg -3'
miRNA:   3'- -CCGC---UGAG----CCGGGGCG-GG-----------CCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 1921 0.71 0.217672
Target:  5'- cGGCGGCcgcCGGCUcgCCGUCCGGGucccaguCCGGGg -3'
miRNA:   3'- -CCGCUGa--GCCGG--GGCGGGCCC-------GGCCU- -5'
31244 5' -67.8 NC_006560.1 + 2076 0.69 0.290176
Target:  5'- cGGCGGCggGGUCCggggGCCCGGcGUCGGc -3'
miRNA:   3'- -CCGCUGagCCGGGg---CGGGCC-CGGCCu -5'
31244 5' -67.8 NC_006560.1 + 2124 0.68 0.315802
Target:  5'- cGGCGuCggGGUCCgGCUCGGGCaGGGc -3'
miRNA:   3'- -CCGCuGagCCGGGgCGGGCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 2647 0.66 0.410521
Target:  5'- cGCGACgaCGGgCCCGUCggCGGGCCa-- -3'
miRNA:   3'- cCGCUGa-GCCgGGGCGG--GCCCGGccu -5'
31244 5' -67.8 NC_006560.1 + 3026 0.71 0.208544
Target:  5'- cGGCGGCgCGGCgCagcggGCCCGaGGCgCGGAg -3'
miRNA:   3'- -CCGCUGaGCCGgGg----CGGGC-CCG-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 3071 0.68 0.309239
Target:  5'- cGCGGC-CGgaGCCCgGCUCGGGCgGGc -3'
miRNA:   3'- cCGCUGaGC--CGGGgCGGGCCCGgCCu -5'
31244 5' -67.8 NC_006560.1 + 3258 0.69 0.290176
Target:  5'- gGGCGGCgcgCGGCgccagCCGCCgcggGGGUCGGGc -3'
miRNA:   3'- -CCGCUGa--GCCGg----GGCGGg---CCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 3300 0.69 0.290176
Target:  5'- gGGCgGGCgggCGGUgagCGCCgCGGGCCGGGg -3'
miRNA:   3'- -CCG-CUGa--GCCGgg-GCGG-GCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 3551 0.7 0.253168
Target:  5'- cGGCGGCggCGGCgccgacggagcgcaCCUGCCgCGGGCUGcGGg -3'
miRNA:   3'- -CCGCUGa-GCCG--------------GGGCGG-GCCCGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 3650 0.78 0.064915
Target:  5'- cGGCGGcCUCGGCgCCGCCgGGGaCgCGGAg -3'
miRNA:   3'- -CCGCU-GAGCCGgGGCGGgCCC-G-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 3786 0.76 0.093675
Target:  5'- cGCGGCgcgcgCGGCCgCCaGCCCGGGCaCGGc -3'
miRNA:   3'- cCGCUGa----GCCGG-GG-CGGGCCCG-GCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.