Results 1 - 20 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 135217 | 0.66 | 0.443014 |
Target: 5'- uGGCGGgucgCGGCCUCG-CUGGaCCGGAc -3' miRNA: 3'- -CCGCUga--GCCGGGGCgGGCCcGGCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 93495 | 0.77 | 0.076899 |
Target: 5'- aGGCcccgccuGACUCGGCCCCucGCuCCGGGCCGc- -3' miRNA: 3'- -CCG-------CUGAGCCGGGG--CG-GGCCCGGCcu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 141593 | 0.77 | 0.081744 |
Target: 5'- cGGCGGCcccggugcccgccgCGGCCCCGCCgGGGgaGGAa -3' miRNA: 3'- -CCGCUGa-------------GCCGGGGCGGgCCCggCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 22544 | 0.77 | 0.082748 |
Target: 5'- cGuCGACUCGGaCCCCGacccggaCCCGGGCuCGGAc -3' miRNA: 3'- cC-GCUGAGCC-GGGGC-------GGGCCCG-GCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 3786 | 0.76 | 0.093675 |
Target: 5'- cGCGGCgcgcgCGGCCgCCaGCCCGGGCaCGGc -3' miRNA: 3'- cCGCUGa----GCCGG-GG-CGGGCCCG-GCCu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 21006 | 0.76 | 0.098323 |
Target: 5'- gGGCGGggCGGCgggCCCGCCCcgaagggcGGGCCGGGg -3' miRNA: 3'- -CCGCUgaGCCG---GGGCGGG--------CCCGGCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 22210 | 0.75 | 0.100727 |
Target: 5'- cGCGGCccgcccccgCGGCCCCgGCCCGGGCCc-- -3' miRNA: 3'- cCGCUGa--------GCCGGGG-CGGGCCCGGccu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 15767 | 0.75 | 0.10545 |
Target: 5'- gGGCGACUcCGGgCCCgggggccggcaggGCCCGGcGCCGGc -3' miRNA: 3'- -CCGCUGA-GCCgGGG-------------CGGGCC-CGGCCu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 149344 | 0.75 | 0.105704 |
Target: 5'- cGGCGGCUCcuCCCCGCCgCGGGgaGGAg -3' miRNA: 3'- -CCGCUGAGccGGGGCGG-GCCCggCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 40318 | 0.77 | 0.075039 |
Target: 5'- gGGCgGGCgCGGCCCCuucuccgGCCCGGGCgGGGc -3' miRNA: 3'- -CCG-CUGaGCCGGGG-------CGGGCCCGgCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 23566 | 0.78 | 0.06819 |
Target: 5'- cGGCGAcCUCGccGCCgUGCCCGGGCUGGc -3' miRNA: 3'- -CCGCU-GAGC--CGGgGCGGGCCCGGCCu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 5647 | 0.78 | 0.066533 |
Target: 5'- gGGCGGCgcccggcCGGCUCCGCCCcgGGGCgCGGGg -3' miRNA: 3'- -CCGCUGa------GCCGGGGCGGG--CCCG-GCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 149487 | 0.81 | 0.042592 |
Target: 5'- cGGCGGCcCGGgccgacgcuCCCCGCCCGGGCCGc- -3' miRNA: 3'- -CCGCUGaGCC---------GGGGCGGGCCCGGCcu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 149829 | 0.8 | 0.045896 |
Target: 5'- aGGCGGCcucgCGGCCCCcgGCCgCGGGCgGGAg -3' miRNA: 3'- -CCGCUGa---GCCGGGG--CGG-GCCCGgCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 32667 | 0.8 | 0.045896 |
Target: 5'- cGGCGGCacggggUCGGCCCagaggGCCgGGGCCGGGg -3' miRNA: 3'- -CCGCUG------AGCCGGGg----CGGgCCCGGCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 146863 | 0.8 | 0.047052 |
Target: 5'- gGGCGGCgccCGGCCCagCGCCUGGGCCaGGGc -3' miRNA: 3'- -CCGCUGa--GCCGGG--GCGGGCCCGG-CCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 137185 | 0.79 | 0.053271 |
Target: 5'- gGGCGcggaggGCgCGGCCCCGCCgGcGGCCGGGg -3' miRNA: 3'- -CCGC------UGaGCCGGGGCGGgC-CCGGCCU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 53825 | 0.79 | 0.054607 |
Target: 5'- aGGaCGACggCGGgCCgGCCCGGGCCGGc -3' miRNA: 3'- -CC-GCUGa-GCCgGGgCGGGCCCGGCCu -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 145552 | 0.79 | 0.055976 |
Target: 5'- cGGgGACgccCGGCCCCGCCCGG-CCGuGAc -3' miRNA: 3'- -CCgCUGa--GCCGGGGCGGGCCcGGC-CU- -5' |
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31244 | 5' | -67.8 | NC_006560.1 | + | 3650 | 0.78 | 0.064915 |
Target: 5'- cGGCGGcCUCGGCgCCGCCgGGGaCgCGGAg -3' miRNA: 3'- -CCGCU-GAGCCGgGGCGGgCCC-G-GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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