miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31244 5' -67.8 NC_006560.1 + 5185 0.83 0.031081
Target:  5'- cGGCGACggCGGCCCCgacggcggggacagcGCCCGGGCCGu- -3'
miRNA:   3'- -CCGCUGa-GCCGGGG---------------CGGGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 149487 0.81 0.042592
Target:  5'- cGGCGGCcCGGgccgacgcuCCCCGCCCGGGCCGc- -3'
miRNA:   3'- -CCGCUGaGCC---------GGGGCGGGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 149829 0.8 0.045896
Target:  5'- aGGCGGCcucgCGGCCCCcgGCCgCGGGCgGGAg -3'
miRNA:   3'- -CCGCUGa---GCCGGGG--CGG-GCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 32667 0.8 0.045896
Target:  5'- cGGCGGCacggggUCGGCCCagaggGCCgGGGCCGGGg -3'
miRNA:   3'- -CCGCUG------AGCCGGGg----CGGgCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 146863 0.8 0.047052
Target:  5'- gGGCGGCgccCGGCCCagCGCCUGGGCCaGGGc -3'
miRNA:   3'- -CCGCUGa--GCCGGG--GCGGGCCCGG-CCU- -5'
31244 5' -67.8 NC_006560.1 + 137185 0.79 0.053271
Target:  5'- gGGCGcggaggGCgCGGCCCCGCCgGcGGCCGGGg -3'
miRNA:   3'- -CCGC------UGaGCCGGGGCGGgC-CCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 53825 0.79 0.054607
Target:  5'- aGGaCGACggCGGgCCgGCCCGGGCCGGc -3'
miRNA:   3'- -CC-GCUGa-GCCgGGgCGGGCCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 145552 0.79 0.055976
Target:  5'- cGGgGACgccCGGCCCCGCCCGG-CCGuGAc -3'
miRNA:   3'- -CCgCUGa--GCCGGGGCGGGCCcGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 3650 0.78 0.064915
Target:  5'- cGGCGGcCUCGGCgCCGCCgGGGaCgCGGAg -3'
miRNA:   3'- -CCGCU-GAGCCGgGGCGGgCCC-G-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 5647 0.78 0.066533
Target:  5'- gGGCGGCgcccggcCGGCUCCGCCCcgGGGCgCGGGg -3'
miRNA:   3'- -CCGCUGa------GCCGGGGCGGG--CCCG-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 23566 0.78 0.06819
Target:  5'- cGGCGAcCUCGccGCCgUGCCCGGGCUGGc -3'
miRNA:   3'- -CCGCU-GAGC--CGGgGCGGGCCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 40318 0.77 0.075039
Target:  5'- gGGCgGGCgCGGCCCCuucuccgGCCCGGGCgGGGc -3'
miRNA:   3'- -CCG-CUGaGCCGGGG-------CGGGCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 93495 0.77 0.076899
Target:  5'- aGGCcccgccuGACUCGGCCCCucGCuCCGGGCCGc- -3'
miRNA:   3'- -CCG-------CUGAGCCGGGG--CG-GGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 141593 0.77 0.081744
Target:  5'- cGGCGGCcccggugcccgccgCGGCCCCGCCgGGGgaGGAa -3'
miRNA:   3'- -CCGCUGa-------------GCCGGGGCGGgCCCggCCU- -5'
31244 5' -67.8 NC_006560.1 + 22544 0.77 0.082748
Target:  5'- cGuCGACUCGGaCCCCGacccggaCCCGGGCuCGGAc -3'
miRNA:   3'- cC-GCUGAGCC-GGGGC-------GGGCCCG-GCCU- -5'
31244 5' -67.8 NC_006560.1 + 3786 0.76 0.093675
Target:  5'- cGCGGCgcgcgCGGCCgCCaGCCCGGGCaCGGc -3'
miRNA:   3'- cCGCUGa----GCCGG-GG-CGGGCCCG-GCCu -5'
31244 5' -67.8 NC_006560.1 + 21006 0.76 0.098323
Target:  5'- gGGCGGggCGGCgggCCCGCCCcgaagggcGGGCCGGGg -3'
miRNA:   3'- -CCGCUgaGCCG---GGGCGGG--------CCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 22210 0.75 0.100727
Target:  5'- cGCGGCccgcccccgCGGCCCCgGCCCGGGCCc-- -3'
miRNA:   3'- cCGCUGa--------GCCGGGG-CGGGCCCGGccu -5'
31244 5' -67.8 NC_006560.1 + 15767 0.75 0.10545
Target:  5'- gGGCGACUcCGGgCCCgggggccggcaggGCCCGGcGCCGGc -3'
miRNA:   3'- -CCGCUGA-GCCgGGG-------------CGGGCC-CGGCCu -5'
31244 5' -67.8 NC_006560.1 + 145807 0.75 0.105704
Target:  5'- gGGCGGCgggcacacgccCGGCCUCGCgcggCGGGCCGGGg -3'
miRNA:   3'- -CCGCUGa----------GCCGGGGCGg---GCCCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.