miRNA display CGI


Results 1 - 20 of 769 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 5' -65.6 NC_006560.1 + 101689 0.66 0.509556
Target:  5'- cCCG-CgGCUcaggaagGCGgCGGCGGCGCgguUGACCu -3'
miRNA:   3'- -GGCaG-CGG-------CGCgGCCGCCGCG---GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 17780 0.66 0.51045
Target:  5'- gUCGUCGUC-CGCuCGaCGGCcuCCGGCCg -3'
miRNA:   3'- -GGCAGCGGcGCG-GCcGCCGc-GGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 5486 0.66 0.519425
Target:  5'- gCgGUCGCgGCgaggGUCGGCGGCGgucgCGGCg -3'
miRNA:   3'- -GgCAGCGgCG----CGGCCGCCGCg---GCUGg -5'
31247 5' -65.6 NC_006560.1 + 13027 0.66 0.51045
Target:  5'- aCCGg-GCCGCGgCGGCaGGcCGUCGGg- -3'
miRNA:   3'- -GGCagCGGCGCgGCCG-CC-GCGGCUgg -5'
31247 5' -65.6 NC_006560.1 + 115096 0.66 0.509556
Target:  5'- gUGUuucUGCCGaCGauCCGGCggcagcuGGCGCUGGCCg -3'
miRNA:   3'- gGCA---GCGGC-GC--GGCCG-------CCGCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 134224 0.66 0.51045
Target:  5'- gUCGgcccCGCC-CGCCGcGCGGC-CCGcCCc -3'
miRNA:   3'- -GGCa---GCGGcGCGGC-CGCCGcGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 46312 0.66 0.51045
Target:  5'- gCGUCGUCGacgcccuaGCCGGCcGCGCCc--- -3'
miRNA:   3'- gGCAGCGGCg-------CGGCCGcCGCGGcugg -5'
31247 5' -65.6 NC_006560.1 + 39182 0.66 0.514032
Target:  5'- cCCGUCGgcccCCGCGCCccGGUcccucucguuccgcgGGCGUgucgggaggggCGACCg -3'
miRNA:   3'- -GGCAGC----GGCGCGG--CCG---------------CCGCG-----------GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 111500 0.66 0.51045
Target:  5'- uCCGUgGCCGUcccCCGGCucacgcaCGCCGACa -3'
miRNA:   3'- -GGCAgCGGCGc--GGCCGcc-----GCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 15311 0.66 0.509556
Target:  5'- cUCGggCGCCcccuccGCGCCGGUcccguucgcggccGGCG-CGGCCg -3'
miRNA:   3'- -GGCa-GCGG------CGCGGCCG-------------CCGCgGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 37113 0.66 0.51045
Target:  5'- cCCGacccaaGCCuCGCCGaucgacccccGCcGCGCCGACCg -3'
miRNA:   3'- -GGCag----CGGcGCGGC----------CGcCGCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 138988 0.66 0.51045
Target:  5'- cCCG-CGUCGCGUCGG-GcCGCUGGCa -3'
miRNA:   3'- -GGCaGCGGCGCGGCCgCcGCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 146568 0.66 0.51045
Target:  5'- -gGUCcCCGCgaGCCGGaGGCGCCcccggcgcccgaGGCCg -3'
miRNA:   3'- ggCAGcGGCG--CGGCCgCCGCGG------------CUGG- -5'
31247 5' -65.6 NC_006560.1 + 24279 0.66 0.51045
Target:  5'- cUCGcUgGCCGCGCgCuGCGGC-CCGcCCg -3'
miRNA:   3'- -GGC-AgCGGCGCG-GcCGCCGcGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 86925 0.66 0.51045
Target:  5'- cCCGgcCGCCGC-CCGGaaGCGCCc-CCg -3'
miRNA:   3'- -GGCa-GCGGCGcGGCCgcCGCGGcuGG- -5'
31247 5' -65.6 NC_006560.1 + 51960 0.66 0.509556
Target:  5'- uCCGggCGCaCGUGuCCgGGCGGCgggcggcgggccuGCCGGCg -3'
miRNA:   3'- -GGCa-GCG-GCGC-GG-CCGCCG-------------CGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 137031 0.66 0.51045
Target:  5'- aCCGguuccUGUCGCGCCucaucuucGGCGG-GCUGAUCc -3'
miRNA:   3'- -GGCa----GCGGCGCGG--------CCGCCgCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 117712 0.66 0.51045
Target:  5'- aCUGgCGCCuGCGguCCcggGGCGGC-CCGGCCu -3'
miRNA:   3'- -GGCaGCGG-CGC--GG---CCGCCGcGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 116721 0.66 0.51045
Target:  5'- -aGUCGUCGCGgUaGCGGCcgaCGGCCg -3'
miRNA:   3'- ggCAGCGGCGCgGcCGCCGcg-GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 143189 0.66 0.565142
Target:  5'- cCCGcgCGCCccGUGCCGGCcuccGGaGCCGcgACCc -3'
miRNA:   3'- -GGCa-GCGG--CGCGGCCG----CCgCGGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.