miRNA display CGI


Results 1 - 20 of 769 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 5' -65.6 NC_006560.1 + 99175 0.86 0.028062
Target:  5'- cCCGggCGCCGCGCCcccggaGGCGGCGCCuGCCg -3'
miRNA:   3'- -GGCa-GCGGCGCGG------CCGCCGCGGcUGG- -5'
31247 5' -65.6 NC_006560.1 + 23402 0.84 0.035197
Target:  5'- gUCGUCGCCGCGCagcgccgccUGGCGGCcgcccucgccGCCGACCg -3'
miRNA:   3'- -GGCAGCGGCGCG---------GCCGCCG----------CGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 25311 0.84 0.036092
Target:  5'- cCCGcCGCCGCGCCGcGCGuGCGCUgGGCCg -3'
miRNA:   3'- -GGCaGCGGCGCGGC-CGC-CGCGG-CUGG- -5'
31247 5' -65.6 NC_006560.1 + 124137 0.84 0.03795
Target:  5'- gCGUCGCgGCGCCGGCGGgGgaGGCCg -3'
miRNA:   3'- gGCAGCGgCGCGGCCGCCgCggCUGG- -5'
31247 5' -65.6 NC_006560.1 + 4872 0.83 0.039901
Target:  5'- gCGUCGaCgGCGgCGGCGGCGCCGGCg -3'
miRNA:   3'- gGCAGC-GgCGCgGCCGCCGCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 103844 0.83 0.041951
Target:  5'- aCCGcCGCCGCGUuugCGGCGGCGCUGGgCa -3'
miRNA:   3'- -GGCaGCGGCGCG---GCCGCCGCGGCUgG- -5'
31247 5' -65.6 NC_006560.1 + 144758 0.83 0.043014
Target:  5'- cCCGUCGCC--GCCGGCGGCGaCGGCCc -3'
miRNA:   3'- -GGCAGCGGcgCGGCCGCCGCgGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 3892 0.83 0.044103
Target:  5'- gCGUCgGCgGCGUCGGCGGCGUCGGCg -3'
miRNA:   3'- gGCAG-CGgCGCGGCCGCCGCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 131838 0.83 0.044103
Target:  5'- gCGUaCGCCGCGgCGGCGGCGgCGACg -3'
miRNA:   3'- gGCA-GCGGCGCgGCCGCCGCgGCUGg -5'
31247 5' -65.6 NC_006560.1 + 14265 0.82 0.048737
Target:  5'- aUGUCGCguugGCGCCGGCGGCGUCG-CCg -3'
miRNA:   3'- gGCAGCGg---CGCGGCCGCCGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 70788 0.82 0.049967
Target:  5'- cUCGUCGCgGCGCCGGcCGGCagcacgcCCGACCa -3'
miRNA:   3'- -GGCAGCGgCGCGGCC-GCCGc------GGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 17509 0.82 0.051228
Target:  5'- gCG-CGCgGgGCCGGCGGCGCCG-CCg -3'
miRNA:   3'- gGCaGCGgCgCGGCCGCCGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 100101 0.82 0.05252
Target:  5'- cCCGgcgaUGCCGgccUGCCGGCGGCGCuCGGCCa -3'
miRNA:   3'- -GGCa---GCGGC---GCGGCCGCCGCG-GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 95335 0.81 0.056587
Target:  5'- aCCG-CGCCGCGCCGGgGGUGuUCGACg -3'
miRNA:   3'- -GGCaGCGGCGCGGCCgCCGC-GGCUGg -5'
31247 5' -65.6 NC_006560.1 + 3471 0.81 0.06096
Target:  5'- gCGg-GCCGCGCgGGCGGCGUCGGCg -3'
miRNA:   3'- gGCagCGGCGCGgCCGCCGCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 21606 0.81 0.062489
Target:  5'- uCCG-CGCCuGCGCgCGGCGcCGCCGGCCg -3'
miRNA:   3'- -GGCaGCGG-CGCG-GCCGCcGCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 43415 0.81 0.062489
Target:  5'- gCGcCGCgGCGCCGGgGGCGUCGGCg -3'
miRNA:   3'- gGCaGCGgCGCGGCCgCCGCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 130310 0.81 0.062489
Target:  5'- gCCGgCGCgGUGgCGGCGGCGCgGGCCg -3'
miRNA:   3'- -GGCaGCGgCGCgGCCGCCGCGgCUGG- -5'
31247 5' -65.6 NC_006560.1 + 5700 0.81 0.062644
Target:  5'- cCCGUCGaggaucgcauuagcaUGCgGCCGGCGGCGCCGcCCg -3'
miRNA:   3'- -GGCAGCg--------------GCG-CGGCCGCCGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 23322 0.8 0.067301
Target:  5'- aCGcCGCCGCgGCCGGCGccGCGCCG-CCg -3'
miRNA:   3'- gGCaGCGGCG-CGGCCGC--CGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.