Results 1 - 20 of 769 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31247 | 5' | -65.6 | NC_006560.1 | + | 143189 | 0.66 | 0.565142 |
Target: 5'- cCCGcgCGCCccGUGCCGGCcuccGGaGCCGcgACCc -3' miRNA: 3'- -GGCa-GCGG--CGCGGCCG----CCgCGGC--UGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 100101 | 0.82 | 0.05252 |
Target: 5'- cCCGgcgaUGCCGgccUGCCGGCGGCGCuCGGCCa -3' miRNA: 3'- -GGCa---GCGGC---GCGGCCGCCGCG-GCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 95335 | 0.81 | 0.056587 |
Target: 5'- aCCG-CGCCGCGCCGGgGGUGuUCGACg -3' miRNA: 3'- -GGCaGCGGCGCGGCCgCCGC-GGCUGg -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 3471 | 0.81 | 0.06096 |
Target: 5'- gCGg-GCCGCGCgGGCGGCGUCGGCg -3' miRNA: 3'- gGCagCGGCGCGgCCGCCGCGGCUGg -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 130310 | 0.81 | 0.062489 |
Target: 5'- gCCGgCGCgGUGgCGGCGGCGCgGGCCg -3' miRNA: 3'- -GGCaGCGgCGCgGCCGCCGCGgCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 43415 | 0.81 | 0.062489 |
Target: 5'- gCGcCGCgGCGCCGGgGGCGUCGGCg -3' miRNA: 3'- gGCaGCGgCGCGGCCgCCGCGGCUGg -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 21606 | 0.81 | 0.062489 |
Target: 5'- uCCG-CGCCuGCGCgCGGCGcCGCCGGCCg -3' miRNA: 3'- -GGCaGCGG-CGCG-GCCGCcGCGGCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 5700 | 0.81 | 0.062644 |
Target: 5'- cCCGUCGaggaucgcauuagcaUGCgGCCGGCGGCGCCGcCCg -3' miRNA: 3'- -GGCAGCg--------------GCG-CGGCCGCCGCGGCuGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 19671 | 0.8 | 0.067301 |
Target: 5'- gCUGUCGUCGuCGCUGGCGGCGUCG-CUg -3' miRNA: 3'- -GGCAGCGGC-GCGGCCGCCGCGGCuGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 17509 | 0.82 | 0.051228 |
Target: 5'- gCG-CGCgGgGCCGGCGGCGCCG-CCg -3' miRNA: 3'- gGCaGCGgCgCGGCCGCCGCGGCuGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 70788 | 0.82 | 0.049967 |
Target: 5'- cUCGUCGCgGCGCCGGcCGGCagcacgcCCGACCa -3' miRNA: 3'- -GGCAGCGgCGCGGCC-GCCGc------GGCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 14265 | 0.82 | 0.048737 |
Target: 5'- aUGUCGCguugGCGCCGGCGGCGUCG-CCg -3' miRNA: 3'- gGCAGCGg---CGCGGCCGCCGCGGCuGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 23402 | 0.84 | 0.035197 |
Target: 5'- gUCGUCGCCGCGCagcgccgccUGGCGGCcgcccucgccGCCGACCg -3' miRNA: 3'- -GGCAGCGGCGCG---------GCCGCCG----------CGGCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 25311 | 0.84 | 0.036092 |
Target: 5'- cCCGcCGCCGCGCCGcGCGuGCGCUgGGCCg -3' miRNA: 3'- -GGCaGCGGCGCGGC-CGC-CGCGG-CUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 124137 | 0.84 | 0.03795 |
Target: 5'- gCGUCGCgGCGCCGGCGGgGgaGGCCg -3' miRNA: 3'- gGCAGCGgCGCGGCCGCCgCggCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 4872 | 0.83 | 0.039901 |
Target: 5'- gCGUCGaCgGCGgCGGCGGCGCCGGCg -3' miRNA: 3'- gGCAGC-GgCGCgGCCGCCGCGGCUGg -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 103844 | 0.83 | 0.041951 |
Target: 5'- aCCGcCGCCGCGUuugCGGCGGCGCUGGgCa -3' miRNA: 3'- -GGCaGCGGCGCG---GCCGCCGCGGCUgG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 144758 | 0.83 | 0.043014 |
Target: 5'- cCCGUCGCC--GCCGGCGGCGaCGGCCc -3' miRNA: 3'- -GGCAGCGGcgCGGCCGCCGCgGCUGG- -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 3892 | 0.83 | 0.044103 |
Target: 5'- gCGUCgGCgGCGUCGGCGGCGUCGGCg -3' miRNA: 3'- gGCAG-CGgCGCGGCCGCCGCGGCUGg -5' |
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31247 | 5' | -65.6 | NC_006560.1 | + | 131838 | 0.83 | 0.044103 |
Target: 5'- gCGUaCGCCGCGgCGGCGGCGgCGACg -3' miRNA: 3'- gGCA-GCGGCGCgGCCGCCGCgGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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