miRNA display CGI


Results 1 - 20 of 769 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 5' -65.6 NC_006560.1 + 2 0.72 0.253085
Target:  5'- cCCG-CGCCGCGuuucCCGGCGGgGCgguuCGGCg -3'
miRNA:   3'- -GGCaGCGGCGC----GGCCGCCgCG----GCUGg -5'
31247 5' -65.6 NC_006560.1 + 110 0.74 0.193204
Target:  5'- cCCG-CgGCCGCgGCCggcgcggguuugGGCGGgGCCGGCCc -3'
miRNA:   3'- -GGCaG-CGGCG-CGG------------CCGCCgCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 212 0.68 0.415929
Target:  5'- gCGcCGCCGCGggagggcCCGGCccgcggcucGGUGCgGGCCc -3'
miRNA:   3'- gGCaGCGGCGC-------GGCCG---------CCGCGgCUGG- -5'
31247 5' -65.6 NC_006560.1 + 494 0.75 0.145072
Target:  5'- cCCGUcggucucgcucuccCGCCacggGCGCCggggGGCGGCgGCCGGCCg -3'
miRNA:   3'- -GGCA--------------GCGG----CGCGG----CCGCCG-CGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 667 0.7 0.320646
Target:  5'- aCCc-CGgCGCGCCcGCGGCGCgGGCUc -3'
miRNA:   3'- -GGcaGCgGCGCGGcCGCCGCGgCUGG- -5'
31247 5' -65.6 NC_006560.1 + 887 0.71 0.294618
Target:  5'- gCGccCGCCcccCGCCGG-GGcCGCCGGCCg -3'
miRNA:   3'- gGCa-GCGGc--GCGGCCgCC-GCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 994 0.7 0.313981
Target:  5'- cCCcUCGCCcCgGCCGG-GGCGCCGucuCCg -3'
miRNA:   3'- -GGcAGCGGcG-CGGCCgCCGCGGCu--GG- -5'
31247 5' -65.6 NC_006560.1 + 1090 0.66 0.546704
Target:  5'- gCCGccCGCCagGCuccCCGGCGGCGCgaGCCc -3'
miRNA:   3'- -GGCa-GCGG--CGc--GGCCGCCGCGgcUGG- -5'
31247 5' -65.6 NC_006560.1 + 1229 0.66 0.554979
Target:  5'- gCCccUGCCGCGCCcccacgcagccccGGCGGgGCCc-CCg -3'
miRNA:   3'- -GGcaGCGGCGCGG-------------CCGCCgCGGcuGG- -5'
31247 5' -65.6 NC_006560.1 + 1469 0.69 0.362841
Target:  5'- cCCGU-GCgCGCGCCccaucGGaGGCGCgCGGCCc -3'
miRNA:   3'- -GGCAgCG-GCGCGG-----CCgCCGCG-GCUGG- -5'
31247 5' -65.6 NC_006560.1 + 1598 0.68 0.441278
Target:  5'- uCCGaUCGaCGCgGCCGGCGcGCGCUcugcgGGCUu -3'
miRNA:   3'- -GGC-AGCgGCG-CGGCCGC-CGCGG-----CUGG- -5'
31247 5' -65.6 NC_006560.1 + 1876 0.75 0.146104
Target:  5'- -gGUCGCgggcggggguCGCgGgCGGCGGCGCCGGCUa -3'
miRNA:   3'- ggCAGCG----------GCG-CgGCCGCCGCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 1953 0.69 0.370238
Target:  5'- uCCGggGUCGCGCCccccagggcgggGGCGGgGCUcggGGCCg -3'
miRNA:   3'- -GGCagCGGCGCGG------------CCGCCgCGG---CUGG- -5'
31247 5' -65.6 NC_006560.1 + 2039 0.71 0.300967
Target:  5'- gUGUCGgCGCgGCCGGCGGCccagcgcacGCgCGGCg -3'
miRNA:   3'- gGCAGCgGCG-CGGCCGCCG---------CG-GCUGg -5'
31247 5' -65.6 NC_006560.1 + 2099 0.68 0.408738
Target:  5'- gCGUCGgCGCGCagcaCGaGCGGCG-CGGCg -3'
miRNA:   3'- gGCAGCgGCGCG----GC-CGCCGCgGCUGg -5'
31247 5' -65.6 NC_006560.1 + 2301 0.78 0.092584
Target:  5'- -aGUCgGgCGCGCCGGCGGCGgCCG-CCu -3'
miRNA:   3'- ggCAG-CgGCGCGGCCGCCGC-GGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 2326 0.69 0.393039
Target:  5'- --cUCGCgCGCgggcgaGUCGGCGGCG-CGGCCg -3'
miRNA:   3'- ggcAGCG-GCG------CGGCCGCCGCgGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 2447 0.7 0.327416
Target:  5'- aCGUUGCCGCcgcgGCCcaggcGCGGCGgCGGCg -3'
miRNA:   3'- gGCAGCGGCG----CGGc----CGCCGCgGCUGg -5'
31247 5' -65.6 NC_006560.1 + 2594 0.66 0.555901
Target:  5'- aCGUCGCacuGCG-CGGCGGgcaGCaCGGCg -3'
miRNA:   3'- gGCAGCGg--CGCgGCCGCCg--CG-GCUGg -5'
31247 5' -65.6 NC_006560.1 + 2659 0.66 0.537556
Target:  5'- cCCGUCGgCGgGCCacuccucgGGCGGCacGgCGuCCa -3'
miRNA:   3'- -GGCAGCgGCgCGG--------CCGCCG--CgGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.