miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 3' -54.3 NC_006560.1 + 149908 0.66 0.950695
Target:  5'- gCCGaagGAAcGGCGGCCgggcgcGGCGUCGGu -3'
miRNA:   3'- -GGUaaaCUU-CUGUCGGa-----CCGCGGCCc -5'
31249 3' -54.3 NC_006560.1 + 25837 0.66 0.954726
Target:  5'- -----aGggGACGGCgUGGCcgggcgcgcGCCcGGGg -3'
miRNA:   3'- gguaaaCuuCUGUCGgACCG---------CGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 51945 0.66 0.958158
Target:  5'- -----aGGAGGCGGCCgcgcuccgGGCGCacgugucCGGGc -3'
miRNA:   3'- gguaaaCUUCUGUCGGa-------CCGCG-------GCCC- -5'
31249 3' -54.3 NC_006560.1 + 76103 0.66 0.950279
Target:  5'- cCCGagcGAGGACGcCCUGGCcgcgugcGUCGGGg -3'
miRNA:   3'- -GGUaaaCUUCUGUcGGACCG-------CGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 27635 0.66 0.946432
Target:  5'- -----cGGGcGCGGCCgGGCGCgGGGc -3'
miRNA:   3'- gguaaaCUUcUGUCGGaCCGCGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 7494 0.66 0.946432
Target:  5'- cCCGggggUGAGGACGGCCcccucCCGGGg -3'
miRNA:   3'- -GGUaa--ACUUCUGUCGGaccgcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 142693 0.66 0.945992
Target:  5'- aCCGgagGggGcgcccggccggccGCGGCCccgaGGCGCCcGGGg -3'
miRNA:   3'- -GGUaaaCuuC-------------UGUCGGa---CCGCGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 76468 0.66 0.958528
Target:  5'- -----aGAAGGCGGCCgagcUGGaC-CCGGGg -3'
miRNA:   3'- gguaaaCUUCUGUCGG----ACC-GcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 45922 0.66 0.956274
Target:  5'- cCCGggggcgagGAcGACGGCCUGGacgguuccgcgguaGCCGGa -3'
miRNA:   3'- -GGUaaa-----CUuCUGUCGGACCg-------------CGGCCc -5'
31249 3' -54.3 NC_006560.1 + 117190 0.66 0.946869
Target:  5'- gCCuggUUGAGGA-AGCCcaugauggucugcacGGCGUCGGGg -3'
miRNA:   3'- -GGua-AACUUCUgUCGGa--------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 33060 0.66 0.946432
Target:  5'- gCGgg-GAAGGCGGCCgaggGGaagGCgGGGa -3'
miRNA:   3'- gGUaaaCUUCUGUCGGa---CCg--CGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 55442 0.66 0.958528
Target:  5'- gCAg--GcGGGCgAGCCcggGGCGCCcGGGg -3'
miRNA:   3'- gGUaaaCuUCUG-UCGGa--CCGCGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 33114 0.66 0.946432
Target:  5'- gCGgg-GAAGGCGGCCgcggGGaagGCgGGGa -3'
miRNA:   3'- gGUaaaCUUCUGUCGGa---CCg--CGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 65025 0.66 0.950695
Target:  5'- cCCGgacUGAcGGCccggagcggGGCCgGGCGCgGGGg -3'
miRNA:   3'- -GGUaa-ACUuCUG---------UCGGaCCGCGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 117088 0.66 0.954726
Target:  5'- aCCAcgUUGAGGAgCucGUCggcGGCGCCGcGGa -3'
miRNA:   3'- -GGUa-AACUUCU-Gu-CGGa--CCGCGGC-CC- -5'
31249 3' -54.3 NC_006560.1 + 14270 0.66 0.954333
Target:  5'- gCGUUggcGccGGCGGCgUcgccggcgagcgcGGCGCCGGGg -3'
miRNA:   3'- gGUAAa--CuuCUGUCGgA-------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 149133 0.66 0.956274
Target:  5'- aCCA-UUGGcuccgccgcggcgcgGGGCGGCCcccaggggcGGCGCgCGGGg -3'
miRNA:   3'- -GGUaAACU---------------UCUGUCGGa--------CCGCG-GCCC- -5'
31249 3' -54.3 NC_006560.1 + 99611 0.66 0.948165
Target:  5'- gCGgcgGggGGCGGCUggcgguccgcggcgaUGGCGCCGa- -3'
miRNA:   3'- gGUaaaCuuCUGUCGG---------------ACCGCGGCcc -5'
31249 3' -54.3 NC_006560.1 + 33165 0.66 0.954726
Target:  5'- cCCGcgggGAAGGCGGCCgcGGgGaaGGGg -3'
miRNA:   3'- -GGUaaa-CUUCUGUCGGa-CCgCggCCC- -5'
31249 3' -54.3 NC_006560.1 + 86698 0.66 0.954726
Target:  5'- gCAgagGuuGugGGCCUGGaugauGCUGGGg -3'
miRNA:   3'- gGUaaaCuuCugUCGGACCg----CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.