miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 3' -54.3 NC_006560.1 + 108978 0.66 0.962104
Target:  5'- gCGgcgUUGAcGACgucGGCCUcGGCGCCGa- -3'
miRNA:   3'- gGUa--AACUuCUG---UCGGA-CCGCGGCcc -5'
31249 3' -54.3 NC_006560.1 + 136013 0.73 0.677561
Target:  5'- -----cGAGGACGGCCggGGCGaguuCCGGGc -3'
miRNA:   3'- gguaaaCUUCUGUCGGa-CCGC----GGCCC- -5'
31249 3' -54.3 NC_006560.1 + 14103 0.72 0.687738
Target:  5'- aCCGgugGAGGACGGCCcccgcgcccaUGGCgGCCaGGGu -3'
miRNA:   3'- -GGUaaaCUUCUGUCGG----------ACCG-CGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 131110 0.72 0.687738
Target:  5'- gCCGagcUGgcGGgGGCCUGGCccgcgGCCGGGg -3'
miRNA:   3'- -GGUaa-ACuuCUgUCGGACCG-----CGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 90491 0.72 0.707945
Target:  5'- cCCAg--GggGGCuucgagcgccGCCUGGCGUCGGu -3'
miRNA:   3'- -GGUaaaCuuCUGu---------CGGACCGCGGCCc -5'
31249 3' -54.3 NC_006560.1 + 147040 0.72 0.727892
Target:  5'- ------cGAGACGGCCggggGGCGgCGGGg -3'
miRNA:   3'- gguaaacUUCUGUCGGa---CCGCgGCCC- -5'
31249 3' -54.3 NC_006560.1 + 12020 0.72 0.737745
Target:  5'- -----aGgcGACGGCgUGGCGgCGGGg -3'
miRNA:   3'- gguaaaCuuCUGUCGgACCGCgGCCC- -5'
31249 3' -54.3 NC_006560.1 + 147287 0.72 0.737745
Target:  5'- gCCGggcgGggGGCucuGGCg-GGCGCCGGGc -3'
miRNA:   3'- -GGUaaa-CuuCUG---UCGgaCCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 129415 0.71 0.747505
Target:  5'- uCCGgcUGugcGGCGGCCUGGCGCagcgucugcgcUGGGa -3'
miRNA:   3'- -GGUaaACuu-CUGUCGGACCGCG-----------GCCC- -5'
31249 3' -54.3 NC_006560.1 + 29009 0.73 0.657102
Target:  5'- cCCAUU---GGACGGCC-GGCcCCGGGg -3'
miRNA:   3'- -GGUAAacuUCUGUCGGaCCGcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 128350 0.73 0.657102
Target:  5'- ----cUGGAGGCGcGCCUGGCcUCGGGg -3'
miRNA:   3'- gguaaACUUCUGU-CGGACCGcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 33628 0.74 0.626283
Target:  5'- gCAgggGggGGCGGgg-GGCGCCGGGg -3'
miRNA:   3'- gGUaaaCuuCUGUCggaCCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 14846 0.78 0.395488
Target:  5'- gCGgggGGAGcgugGCGGCCgGGCGCCGGGg -3'
miRNA:   3'- gGUaaaCUUC----UGUCGGaCCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 108505 0.77 0.448552
Target:  5'- gCCGggggGAGGGCGGCC-GGCGgCGGGc -3'
miRNA:   3'- -GGUaaa-CUUCUGUCGGaCCGCgGCCC- -5'
31249 3' -54.3 NC_006560.1 + 89313 0.75 0.554872
Target:  5'- cCCGgcggGAccucAGACGGCCggGGCGCgCGGGu -3'
miRNA:   3'- -GGUaaa-CU----UCUGUCGGa-CCGCG-GCCC- -5'
31249 3' -54.3 NC_006560.1 + 39362 0.75 0.554872
Target:  5'- cCCGgcccc-GGCGGCCccGGCGCCGGGa -3'
miRNA:   3'- -GGUaaacuuCUGUCGGa-CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 22155 0.74 0.605745
Target:  5'- gCCAUgguggaGGAGACGGCCcgGGCGCuguccccgccguCGGGg -3'
miRNA:   3'- -GGUAaa----CUUCUGUCGGa-CCGCG------------GCCC- -5'
31249 3' -54.3 NC_006560.1 + 39411 0.74 0.616008
Target:  5'- -----cGggGGC-GCCgcGGCGCCGGGg -3'
miRNA:   3'- gguaaaCuuCUGuCGGa-CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 118108 0.74 0.616008
Target:  5'- cCCAUcucccccGAGGcGCAGCUcgcGGCGCCGGGg -3'
miRNA:   3'- -GGUAaa-----CUUC-UGUCGGa--CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 130094 0.74 0.626283
Target:  5'- gCCAUgggcGAGGACGGgCUGGCGUgGGc -3'
miRNA:   3'- -GGUAaa--CUUCUGUCgGACCGCGgCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.