miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 3' -54.3 NC_006560.1 + 1968 0.68 0.890659
Target:  5'- cCCAgggcGggGGCggGGCUcGGgGCCGGGc -3'
miRNA:   3'- -GGUaaa-CuuCUG--UCGGaCCgCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 3647 0.7 0.803599
Target:  5'- -----cGAcGGCGGCCUcGGCGCCgccGGGg -3'
miRNA:   3'- gguaaaCUuCUGUCGGA-CCGCGG---CCC- -5'
31249 3' -54.3 NC_006560.1 + 4039 0.67 0.915839
Target:  5'- cCCGg--GgcGGCGGCgC-GGCGCCGGc -3'
miRNA:   3'- -GGUaaaCuuCUGUCG-GaCCGCGGCCc -5'
31249 3' -54.3 NC_006560.1 + 4387 0.67 0.915839
Target:  5'- gCGUgaUGAGGGCGuaCUGGCGCgCGGc -3'
miRNA:   3'- gGUAa-ACUUCUGUcgGACCGCG-GCCc -5'
31249 3' -54.3 NC_006560.1 + 5670 0.7 0.79459
Target:  5'- cCCGgggcgcGggGGCGGCCggcGGCGCCGc- -3'
miRNA:   3'- -GGUaaa---CuuCUGUCGGa--CCGCGGCcc -5'
31249 3' -54.3 NC_006560.1 + 7494 0.66 0.946432
Target:  5'- cCCGggggUGAGGACGGCCcccucCCGGGg -3'
miRNA:   3'- -GGUaa--ACUUCUGUCGGaccgcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 8852 0.67 0.941932
Target:  5'- uCCAUgucgggcGggGuCGGUCUGGgGUgGGGg -3'
miRNA:   3'- -GGUAaa-----CuuCuGUCGGACCgCGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 11342 0.67 0.941932
Target:  5'- aCCGgcgaggGggGGCGGUagaUGcGgGCCGGGu -3'
miRNA:   3'- -GGUaaa---CuuCUGUCGg--AC-CgCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 11472 0.69 0.864864
Target:  5'- uCCGcgUGGccgucagcucguaccGGGaGGCCUcgGGCGCCGGGg -3'
miRNA:   3'- -GGUaaACU---------------UCUgUCGGA--CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 12020 0.72 0.737745
Target:  5'- -----aGgcGACGGCgUGGCGgCGGGg -3'
miRNA:   3'- gguaaaCuuCUGUCGgACCGCgGCCC- -5'
31249 3' -54.3 NC_006560.1 + 14103 0.72 0.687738
Target:  5'- aCCGgugGAGGACGGCCcccgcgcccaUGGCgGCCaGGGu -3'
miRNA:   3'- -GGUaaaCUUCUGUCGG----------ACCG-CGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 14183 0.69 0.876682
Target:  5'- uCCGUcUGGAGAaacGCCcagGGCGUgGGGu -3'
miRNA:   3'- -GGUAaACUUCUgu-CGGa--CCGCGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 14270 0.66 0.954333
Target:  5'- gCGUUggcGccGGCGGCgUcgccggcgagcgcGGCGCCGGGg -3'
miRNA:   3'- gGUAAa--CuuCUGUCGgA-------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 14846 0.78 0.395488
Target:  5'- gCGgggGGAGcgugGCGGCCgGGCGCCGGGg -3'
miRNA:   3'- gGUaaaCUUC----UGUCGGaCCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 15774 0.68 0.897306
Target:  5'- uCCGggcccGggGGCcggcagGGCCcGGCGCCGGcGg -3'
miRNA:   3'- -GGUaaa--CuuCUG------UCGGaCCGCGGCC-C- -5'
31249 3' -54.3 NC_006560.1 + 16281 0.71 0.747505
Target:  5'- -----cGGAGACGGCCgaccccuggGGCGCggCGGGg -3'
miRNA:   3'- gguaaaCUUCUGUCGGa--------CCGCG--GCCC- -5'
31249 3' -54.3 NC_006560.1 + 16506 0.69 0.842896
Target:  5'- --cUUUGAAacagcGGCAGCCgcagcagcuccgcGGCGCUGGGg -3'
miRNA:   3'- gguAAACUU-----CUGUCGGa------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 17207 0.68 0.890659
Target:  5'- aCGUcc-AGGAgGGCCaGGaCGCCGGGg -3'
miRNA:   3'- gGUAaacUUCUgUCGGaCC-GCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 17488 0.67 0.932217
Target:  5'- gCCGgggGggGugGGgCUGgaGCGCgCGGGg -3'
miRNA:   3'- -GGUaaaCuuCugUCgGAC--CGCG-GCCC- -5'
31249 3' -54.3 NC_006560.1 + 17655 0.7 0.793681
Target:  5'- uCCGgcaGAggcGGGCGGCCUcgucccgGGCGCCGuGGg -3'
miRNA:   3'- -GGUaaaCU---UCUGUCGGA-------CCGCGGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.