Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31249 | 3' | -54.3 | NC_006560.1 | + | 88874 | 0.78 | 0.378721 |
Target: 5'- gCCGUgccccGGAGACGGCCgGGCgaggGCCGGGu -3' miRNA: 3'- -GGUAaa---CUUCUGUCGGaCCG----CGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 14846 | 0.78 | 0.395488 |
Target: 5'- gCGgggGGAGcgugGCGGCCgGGCGCCGGGg -3' miRNA: 3'- gGUaaaCUUC----UGUCGGaCCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 108505 | 0.77 | 0.448552 |
Target: 5'- gCCGggggGAGGGCGGCC-GGCGgCGGGc -3' miRNA: 3'- -GGUaaa-CUUCUGUCGGaCCGCgGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 89313 | 0.75 | 0.554872 |
Target: 5'- cCCGgcggGAccucAGACGGCCggGGCGCgCGGGu -3' miRNA: 3'- -GGUaaa-CU----UCUGUCGGa-CCGCG-GCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 39362 | 0.75 | 0.554872 |
Target: 5'- cCCGgcccc-GGCGGCCccGGCGCCGGGa -3' miRNA: 3'- -GGUaaacuuCUGUCGGa-CCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 22155 | 0.74 | 0.605745 |
Target: 5'- gCCAUgguggaGGAGACGGCCcgGGCGCuguccccgccguCGGGg -3' miRNA: 3'- -GGUAaa----CUUCUGUCGGa-CCGCG------------GCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 39411 | 0.74 | 0.616008 |
Target: 5'- -----cGggGGC-GCCgcGGCGCCGGGg -3' miRNA: 3'- gguaaaCuuCUGuCGGa-CCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 118108 | 0.74 | 0.616008 |
Target: 5'- cCCAUcucccccGAGGcGCAGCUcgcGGCGCCGGGg -3' miRNA: 3'- -GGUAaa-----CUUC-UGUCGGa--CCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 130094 | 0.74 | 0.626283 |
Target: 5'- gCCAUgggcGAGGACGGgCUGGCGUgGGc -3' miRNA: 3'- -GGUAaa--CUUCUGUCgGACCGCGgCCc -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 33628 | 0.74 | 0.626283 |
Target: 5'- gCAgggGggGGCGGgg-GGCGCCGGGg -3' miRNA: 3'- gGUaaaCuuCUGUCggaCCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 29009 | 0.73 | 0.657102 |
Target: 5'- cCCAUU---GGACGGCC-GGCcCCGGGg -3' miRNA: 3'- -GGUAAacuUCUGUCGGaCCGcGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 128350 | 0.73 | 0.657102 |
Target: 5'- ----cUGGAGGCGcGCCUGGCcUCGGGg -3' miRNA: 3'- gguaaACUUCUGU-CGGACCGcGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 136013 | 0.73 | 0.677561 |
Target: 5'- -----cGAGGACGGCCggGGCGaguuCCGGGc -3' miRNA: 3'- gguaaaCUUCUGUCGGa-CCGC----GGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 14103 | 0.72 | 0.687738 |
Target: 5'- aCCGgugGAGGACGGCCcccgcgcccaUGGCgGCCaGGGu -3' miRNA: 3'- -GGUaaaCUUCUGUCGG----------ACCG-CGG-CCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 131110 | 0.72 | 0.687738 |
Target: 5'- gCCGagcUGgcGGgGGCCUGGCccgcgGCCGGGg -3' miRNA: 3'- -GGUaa-ACuuCUgUCGGACCG-----CGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 90491 | 0.72 | 0.707945 |
Target: 5'- cCCAg--GggGGCuucgagcgccGCCUGGCGUCGGu -3' miRNA: 3'- -GGUaaaCuuCUGu---------CGGACCGCGGCCc -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 147040 | 0.72 | 0.727892 |
Target: 5'- ------cGAGACGGCCggggGGCGgCGGGg -3' miRNA: 3'- gguaaacUUCUGUCGGa---CCGCgGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 12020 | 0.72 | 0.737745 |
Target: 5'- -----aGgcGACGGCgUGGCGgCGGGg -3' miRNA: 3'- gguaaaCuuCUGUCGgACCGCgGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 147287 | 0.72 | 0.737745 |
Target: 5'- gCCGggcgGggGGCucuGGCg-GGCGCCGGGc -3' miRNA: 3'- -GGUaaa-CuuCUG---UCGgaCCGCGGCCC- -5' |
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31249 | 3' | -54.3 | NC_006560.1 | + | 16281 | 0.71 | 0.747505 |
Target: 5'- -----cGGAGACGGCCgaccccuggGGCGCggCGGGg -3' miRNA: 3'- gguaaaCUUCUGUCGGa--------CCGCG--GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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