miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 3' -67 NC_006560.1 + 774 0.65 0.479585
Target:  5'- gGCGCgGGUCcuuuCUGGgCCUCGgguucgcuuccggcCGCCGCg -3'
miRNA:   3'- -CGCGgCCAGc---GGCCgGGGGU--------------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 101783 0.66 0.431341
Target:  5'- uCGCCGGgggCGgCGGCaggaCgCCguggcggagcaGCGCCGCg -3'
miRNA:   3'- cGCGGCCa--GCgGCCGg---G-GG-----------UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 29204 0.66 0.439602
Target:  5'- cCGCCGuccCGCCgggaGGCCUCCGCGCUc- -3'
miRNA:   3'- cGCGGCca-GCGG----CCGGGGGUGCGGcg -5'
31261 3' -67 NC_006560.1 + 30748 0.66 0.431341
Target:  5'- gGC-CCGGcCcCCGGCCCUgACGCagGCc -3'
miRNA:   3'- -CGcGGCCaGcGGCCGGGGgUGCGg-CG- -5'
31261 3' -67 NC_006560.1 + 36764 0.66 0.431341
Target:  5'- -aGCCcGUCGCCcGCCgCgGaCGCCGCc -3'
miRNA:   3'- cgCGGcCAGCGGcCGGgGgU-GCGGCG- -5'
31261 3' -67 NC_006560.1 + 40100 0.66 0.431341
Target:  5'- gGCGCCcgGGcCGCCGGgCggagaCUCGCGUCGUc -3'
miRNA:   3'- -CGCGG--CCaGCGGCCgG-----GGGUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 67288 0.66 0.431341
Target:  5'- cGgGUgGGUCGCCGcuccaCCCCGCuuCCGCc -3'
miRNA:   3'- -CgCGgCCAGCGGCcg---GGGGUGc-GGCG- -5'
31261 3' -67 NC_006560.1 + 18414 0.66 0.431341
Target:  5'- cGCGCCugcGGcugCGacCCGGCCgCCGCgGCCGg -3'
miRNA:   3'- -CGCGG---CCa--GC--GGCCGGgGGUG-CGGCg -5'
31261 3' -67 NC_006560.1 + 128761 0.66 0.431341
Target:  5'- cCGCCcaguucucggaGGUCaCCGGCCUCCucUGCCGg -3'
miRNA:   3'- cGCGG-----------CCAGcGGCCGGGGGu-GCGGCg -5'
31261 3' -67 NC_006560.1 + 133264 0.66 0.431341
Target:  5'- cGCGgugaaCCGGaCGUCGcGCCCCgcCGCcuGCCGCa -3'
miRNA:   3'- -CGC-----GGCCaGCGGC-CGGGG--GUG--CGGCG- -5'
31261 3' -67 NC_006560.1 + 130425 0.66 0.437114
Target:  5'- aGCGCgaGGUgGgCGGCgcgccccucuucguCCCCGCGCgCGUc -3'
miRNA:   3'- -CGCGg-CCAgCgGCCG--------------GGGGUGCG-GCG- -5'
31261 3' -67 NC_006560.1 + 97090 0.66 0.431341
Target:  5'- cGCGCCGaGUa--CGGCCCCU-CGuuCCGCu -3'
miRNA:   3'- -CGCGGC-CAgcgGCCGGGGGuGC--GGCG- -5'
31261 3' -67 NC_006560.1 + 131390 0.66 0.431341
Target:  5'- gGUGCUGGcgggCGCUGGCCgCgGaCGCgCGCc -3'
miRNA:   3'- -CGCGGCCa---GCGGCCGGgGgU-GCG-GCG- -5'
31261 3' -67 NC_006560.1 + 124700 0.66 0.439602
Target:  5'- -gGgCGGacgaacgaGCCGGCCgCCCgcGCGCUGCu -3'
miRNA:   3'- cgCgGCCag------CGGCCGG-GGG--UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 87133 0.66 0.431341
Target:  5'- aCGCaguacUCGCCGaucaCCCCGCGCUGCg -3'
miRNA:   3'- cGCGgcc--AGCGGCcg--GGGGUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 25393 0.66 0.439602
Target:  5'- -aGCUGGcC-CCGGCCCCgaGCcCCGCc -3'
miRNA:   3'- cgCGGCCaGcGGCCGGGGg-UGcGGCG- -5'
31261 3' -67 NC_006560.1 + 24196 0.66 0.439602
Target:  5'- cGCGUC-GUCGCCGaGCUCucggaCCAC-CCGCu -3'
miRNA:   3'- -CGCGGcCAGCGGC-CGGG-----GGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 149509 0.66 0.438772
Target:  5'- cCGCCcgGGcCGCCGGCCCgggaCCACcgacucaccccagGaCCGCa -3'
miRNA:   3'- cGCGG--CCaGCGGCCGGG----GGUG-------------C-GGCG- -5'
31261 3' -67 NC_006560.1 + 49484 0.66 0.431341
Target:  5'- gGgGCUGauGUCGCCccGCCCCCGaacuCGUCGCc -3'
miRNA:   3'- -CgCGGC--CAGCGGc-CGGGGGU----GCGGCG- -5'
31261 3' -67 NC_006560.1 + 8086 0.66 0.431341
Target:  5'- cGCGuUCGGcUG-CGGCagCCCCGCGCCGa -3'
miRNA:   3'- -CGC-GGCCaGCgGCCG--GGGGUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.