Results 1 - 20 of 715 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31261 | 3' | -67 | NC_006560.1 | + | 23759 | 0.87 | 0.015175 |
Target: 5'- cGCGCCGugggccucGUCGCCGGCgCCgCCGCGCCGCu -3' miRNA: 3'- -CGCGGC--------CAGCGGCCG-GG-GGUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 18961 | 0.82 | 0.038651 |
Target: 5'- gGCGCCGGgcgUCGCgGGCCgCgACGCCGCc -3' miRNA: 3'- -CGCGGCC---AGCGgCCGGgGgUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 10924 | 0.81 | 0.04381 |
Target: 5'- cCGCCGGcggCGCCuuaaauGGCCCCCGCGCCaGCc -3' miRNA: 3'- cGCGGCCa--GCGG------CCGGGGGUGCGG-CG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 25287 | 0.81 | 0.044808 |
Target: 5'- cGCGCCGa-CGCCgGGCCCCCggaccccgccgccGCGCCGCg -3' miRNA: 3'- -CGCGGCcaGCGG-CCGGGGG-------------UGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 116888 | 0.81 | 0.04492 |
Target: 5'- cGgGCCGGUCGUCGGCCgCCuCGCgGCu -3' miRNA: 3'- -CgCGGCCAGCGGCCGGgGGuGCGgCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 78636 | 0.81 | 0.046057 |
Target: 5'- cGCGCUGGUCGCCGcGCgCCCGC-UCGCg -3' miRNA: 3'- -CGCGGCCAGCGGC-CGgGGGUGcGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 34966 | 0.81 | 0.047222 |
Target: 5'- gGCGCCGGgcucCGCCgGGCCCCCcgggcgccucgGgGCCGCg -3' miRNA: 3'- -CGCGGCCa---GCGG-CCGGGGG-----------UgCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 150305 | 0.81 | 0.048296 |
Target: 5'- cGCGCCGccgCGggagggcCCGGcCCCCCGCGCCGCg -3' miRNA: 3'- -CGCGGCca-GC-------GGCC-GGGGGUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 37687 | 0.8 | 0.057209 |
Target: 5'- cGCGCCGGgCGCCgggccgcucuugauGGUCCCCGCGCUGa -3' miRNA: 3'- -CGCGGCCaGCGG--------------CCGGGGGUGCGGCg -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 134621 | 0.8 | 0.057637 |
Target: 5'- -aGCCGGUCGCCGGCCCagaGCGgCGg -3' miRNA: 3'- cgCGGCCAGCGGCCGGGgg-UGCgGCg -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 39594 | 0.79 | 0.062091 |
Target: 5'- gGUGgCGGgcgCGCCGGCCCgCggaGCGCCGCg -3' miRNA: 3'- -CGCgGCCa--GCGGCCGGGgG---UGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 144204 | 0.79 | 0.06271 |
Target: 5'- cGgGCCGG-CGCCcgccucccugccggcGGCCCCC-CGCCGCc -3' miRNA: 3'- -CgCGGCCaGCGG---------------CCGGGGGuGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 35404 | 0.79 | 0.063648 |
Target: 5'- aGCgGCCGG-CGCCGGCCgCgCC-CGCCGCc -3' miRNA: 3'- -CG-CGGCCaGCGGCCGG-G-GGuGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 72911 | 0.79 | 0.063648 |
Target: 5'- cGCGCugCGGgagCGCCGGCCCCCGgagcccccCGCCuGCg -3' miRNA: 3'- -CGCG--GCCa--GCGGCCGGGGGU--------GCGG-CG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 12520 | 0.79 | 0.066383 |
Target: 5'- aCGgCGGUCGCCGGgucaguagggcgugUCCCgGCGCCGCg -3' miRNA: 3'- cGCgGCCAGCGGCC--------------GGGGgUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 106515 | 0.79 | 0.066877 |
Target: 5'- cCGCCGaGgcggCGgUGGCCCCCAgCGCCGCg -3' miRNA: 3'- cGCGGC-Ca---GCgGCCGGGGGU-GCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 96223 | 0.78 | 0.06855 |
Target: 5'- cGCGUCGGUCgagGCCGGCCgCgCgACGCUGCg -3' miRNA: 3'- -CGCGGCCAG---CGGCCGG-G-GgUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 65338 | 0.78 | 0.072017 |
Target: 5'- gGgGCCGGcUCGCCGGCCCCaGCcCCGUc -3' miRNA: 3'- -CgCGGCC-AGCGGCCGGGGgUGcGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 115820 | 0.78 | 0.072017 |
Target: 5'- gGCGCUcGUCGCCuGGCUCgCgCACGCCGCg -3' miRNA: 3'- -CGCGGcCAGCGG-CCGGG-G-GUGCGGCG- -5' |
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31261 | 3' | -67 | NC_006560.1 | + | 30841 | 0.78 | 0.072017 |
Target: 5'- gGCGCUGGgccgggCGCCGcccCgCCCCGCGCCGCc -3' miRNA: 3'- -CGCGGCCa-----GCGGCc--G-GGGGUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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