miRNA display CGI


Results 1 - 20 of 715 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 3' -67 NC_006560.1 + 92 0.77 0.08981
Target:  5'- cGCGCCccgCGCCccGCCCCCGCGgCCGCg -3'
miRNA:   3'- -CGCGGccaGCGGc-CGGGGGUGC-GGCG- -5'
31261 3' -67 NC_006560.1 + 125 0.73 0.167279
Target:  5'- gGCGCgGGUUugggcgggGCCGG-CCCCGCcCCGCg -3'
miRNA:   3'- -CGCGgCCAG--------CGGCCgGGGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 169 0.7 0.259743
Target:  5'- cCGCCccgcGGUC-CCGGCCCcgccggcguuuuuuuCCGCGCgCGCg -3'
miRNA:   3'- cGCGG----CCAGcGGCCGGG---------------GGUGCG-GCG- -5'
31261 3' -67 NC_006560.1 + 273 0.78 0.073813
Target:  5'- -gGCCgGGUCGCgaggcccgcuuCGGUCCCCAgGCCGCa -3'
miRNA:   3'- cgCGG-CCAGCG-----------GCCGGGGGUgCGGCG- -5'
31261 3' -67 NC_006560.1 + 392 0.66 0.473515
Target:  5'- cCGCCcGUgCGCCcGCCCCCcC-CCGCc -3'
miRNA:   3'- cGCGGcCA-GCGGcCGGGGGuGcGGCG- -5'
31261 3' -67 NC_006560.1 + 419 0.68 0.368694
Target:  5'- cCGCCuguggGGuUCcCCGGCCUCCGCGgccuCCGCg -3'
miRNA:   3'- cGCGG-----CC-AGcGGCCGGGGGUGC----GGCG- -5'
31261 3' -67 NC_006560.1 + 520 0.74 0.152314
Target:  5'- gGCGCCGGggggCGgCGGCCggCCGCGCCcCg -3'
miRNA:   3'- -CGCGGCCa---GCgGCCGGg-GGUGCGGcG- -5'
31261 3' -67 NC_006560.1 + 576 0.76 0.109064
Target:  5'- cCGUCGGUCucgcucuccCCGGCuCCuCCGCGCCGCg -3'
miRNA:   3'- cGCGGCCAGc--------GGCCG-GG-GGUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 683 0.68 0.354037
Target:  5'- gGCGCgGGcucgUCGCgGGCCCCguCcccccCCGCg -3'
miRNA:   3'- -CGCGgCC----AGCGgCCGGGGguGc----GGCG- -5'
31261 3' -67 NC_006560.1 + 774 0.65 0.479585
Target:  5'- gGCGCgGGUCcuuuCUGGgCCUCGgguucgcuuccggcCGCCGCg -3'
miRNA:   3'- -CGCGgCCAGc---GGCCgGGGGU--------------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 853 0.67 0.383762
Target:  5'- cGCGCgCGccCGCCcacGGCCCCCGCccccUCGCg -3'
miRNA:   3'- -CGCG-GCcaGCGG---CCGGGGGUGc---GGCG- -5'
31261 3' -67 NC_006560.1 + 898 0.7 0.26318
Target:  5'- cCGCCGGggcCGCCGGCCgcuCCCG-GCgGUg -3'
miRNA:   3'- cGCGGCCa--GCGGCCGG---GGGUgCGgCG- -5'
31261 3' -67 NC_006560.1 + 1005 0.68 0.346864
Target:  5'- -gGCCGGggCGCCGucuCCgCCC-CGCCGUc -3'
miRNA:   3'- cgCGGCCa-GCGGCc--GG-GGGuGCGGCG- -5'
31261 3' -67 NC_006560.1 + 1089 0.68 0.368694
Target:  5'- -aGCCGccCGCCaGGCUCCCcgGCGgCGCg -3'
miRNA:   3'- cgCGGCcaGCGG-CCGGGGG--UGCgGCG- -5'
31261 3' -67 NC_006560.1 + 1221 0.71 0.210573
Target:  5'- gGgGCgGGgccccUGCCGcGCCCCCACGCaGCc -3'
miRNA:   3'- -CgCGgCCa----GCGGC-CGGGGGUGCGgCG- -5'
31261 3' -67 NC_006560.1 + 1292 0.72 0.201204
Target:  5'- cGCGCCGGgcCGcCCGGgUUCCGC-CCGCa -3'
miRNA:   3'- -CGCGGCCa-GC-GGCCgGGGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 1357 0.72 0.196657
Target:  5'- cGCGCgGGUCcCCcgcGGCCCgCACGgCGCc -3'
miRNA:   3'- -CGCGgCCAGcGG---CCGGGgGUGCgGCG- -5'
31261 3' -67 NC_006560.1 + 1503 0.66 0.447952
Target:  5'- aCGCCGGcgggagCGCgugcauCGGgCCCCGgGCgCGCg -3'
miRNA:   3'- cGCGGCCa-----GCG------GCCgGGGGUgCG-GCG- -5'
31261 3' -67 NC_006560.1 + 1902 0.73 0.167279
Target:  5'- gGCGCCGGcuaccaguccUCGgCGGCCgCCGgcuCGCCGUc -3'
miRNA:   3'- -CGCGGCC----------AGCgGCCGGgGGU---GCGGCG- -5'
31261 3' -67 NC_006560.1 + 2044 0.69 0.319223
Target:  5'- gGCG-CGGcCGgCGGCCCagcgcaCGCGCgGCg -3'
miRNA:   3'- -CGCgGCCaGCgGCCGGGg-----GUGCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.