miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 3' -67 NC_006560.1 + 774 0.65 0.479585
Target:  5'- gGCGCgGGUCcuuuCUGGgCCUCGgguucgcuuccggcCGCCGCg -3'
miRNA:   3'- -CGCGgCCAGc---GGCCgGGGGU--------------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 35404 0.79 0.063648
Target:  5'- aGCgGCCGG-CGCCGGCCgCgCC-CGCCGCc -3'
miRNA:   3'- -CG-CGGCCaGCGGCCGG-G-GGuGCGGCG- -5'
31261 3' -67 NC_006560.1 + 72911 0.79 0.063648
Target:  5'- cGCGCugCGGgagCGCCGGCCCCCGgagcccccCGCCuGCg -3'
miRNA:   3'- -CGCG--GCCa--GCGGCCGGGGGU--------GCGG-CG- -5'
31261 3' -67 NC_006560.1 + 12520 0.79 0.066383
Target:  5'- aCGgCGGUCGCCGGgucaguagggcgugUCCCgGCGCCGCg -3'
miRNA:   3'- cGCgGCCAGCGGCC--------------GGGGgUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 106515 0.79 0.066877
Target:  5'- cCGCCGaGgcggCGgUGGCCCCCAgCGCCGCg -3'
miRNA:   3'- cGCGGC-Ca---GCgGCCGGGGGU-GCGGCG- -5'
31261 3' -67 NC_006560.1 + 96223 0.78 0.06855
Target:  5'- cGCGUCGGUCgagGCCGGCCgCgCgACGCUGCg -3'
miRNA:   3'- -CGCGGCCAG---CGGCCGG-G-GgUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 65338 0.78 0.072017
Target:  5'- gGgGCCGGcUCGCCGGCCCCaGCcCCGUc -3'
miRNA:   3'- -CgCGGCC-AGCGGCCGGGGgUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 115820 0.78 0.072017
Target:  5'- gGCGCUcGUCGCCuGGCUCgCgCACGCCGCg -3'
miRNA:   3'- -CGCGGcCAGCGG-CCGGG-G-GUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 30841 0.78 0.072017
Target:  5'- gGCGCUGGgccgggCGCCGcccCgCCCCGCGCCGCc -3'
miRNA:   3'- -CGCGGCCa-----GCGGCc--G-GGGGUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 144204 0.79 0.06271
Target:  5'- cGgGCCGG-CGCCcgccucccugccggcGGCCCCC-CGCCGCc -3'
miRNA:   3'- -CgCGGCCaGCGG---------------CCGGGGGuGCGGCG- -5'
31261 3' -67 NC_006560.1 + 39594 0.79 0.062091
Target:  5'- gGUGgCGGgcgCGCCGGCCCgCggaGCGCCGCg -3'
miRNA:   3'- -CGCgGCCa--GCGGCCGGGgG---UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 134621 0.8 0.057637
Target:  5'- -aGCCGGUCGCCGGCCCagaGCGgCGg -3'
miRNA:   3'- cgCGGCCAGCGGCCGGGgg-UGCgGCg -5'
31261 3' -67 NC_006560.1 + 18961 0.82 0.038651
Target:  5'- gGCGCCGGgcgUCGCgGGCCgCgACGCCGCc -3'
miRNA:   3'- -CGCGGCC---AGCGgCCGGgGgUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 10924 0.81 0.04381
Target:  5'- cCGCCGGcggCGCCuuaaauGGCCCCCGCGCCaGCc -3'
miRNA:   3'- cGCGGCCa--GCGG------CCGGGGGUGCGG-CG- -5'
31261 3' -67 NC_006560.1 + 25287 0.81 0.044808
Target:  5'- cGCGCCGa-CGCCgGGCCCCCggaccccgccgccGCGCCGCg -3'
miRNA:   3'- -CGCGGCcaGCGG-CCGGGGG-------------UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 116888 0.81 0.04492
Target:  5'- cGgGCCGGUCGUCGGCCgCCuCGCgGCu -3'
miRNA:   3'- -CgCGGCCAGCGGCCGGgGGuGCGgCG- -5'
31261 3' -67 NC_006560.1 + 78636 0.81 0.046057
Target:  5'- cGCGCUGGUCGCCGcGCgCCCGC-UCGCg -3'
miRNA:   3'- -CGCGGCCAGCGGC-CGgGGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 34966 0.81 0.047222
Target:  5'- gGCGCCGGgcucCGCCgGGCCCCCcgggcgccucgGgGCCGCg -3'
miRNA:   3'- -CGCGGCCa---GCGG-CCGGGGG-----------UgCGGCG- -5'
31261 3' -67 NC_006560.1 + 150305 0.81 0.048296
Target:  5'- cGCGCCGccgCGggagggcCCGGcCCCCCGCGCCGCg -3'
miRNA:   3'- -CGCGGCca-GC-------GGCC-GGGGGUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 37687 0.8 0.057209
Target:  5'- cGCGCCGGgCGCCgggccgcucuugauGGUCCCCGCGCUGa -3'
miRNA:   3'- -CGCGGCCaGCGG--------------CCGGGGGUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.