miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 5' -46.5 NC_001493.1 + 72871 0.66 0.99985
Target:  5'- cUCGUggGCCGGGAuggaGAGC-UCGCCCc -3'
miRNA:   3'- -AGCA--CGGCUUUuauaUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 68048 0.66 0.99991
Target:  5'- aUCcUGCgGAAGAUGgucccucUGAACcCCGCUCg -3'
miRNA:   3'- -AGcACGgCUUUUAU-------AUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 15910 0.66 0.999885
Target:  5'- aUCGUGaCCGAAGAg--GGACuccuggaucaGCCGUUCc -3'
miRNA:   3'- -AGCAC-GGCUUUUauaUUUG----------UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 54857 0.66 0.99985
Target:  5'- cUGUGCCccGggGAgcgaGUGGugcgaGCCGCCCc -3'
miRNA:   3'- aGCACGG--CuuUUa---UAUUug---UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 105664 0.66 0.999951
Target:  5'- uUCGUGCCaugggcgcccaGGGuGUAgugGAACACCGguaCCa -3'
miRNA:   3'- -AGCACGG-----------CUUuUAUa--UUUGUGGCg--GG- -5'
3130 5' -46.5 NC_001493.1 + 63186 0.66 0.999885
Target:  5'- -gGUGUCGGucgcucccGUGGGCAUCGCCg -3'
miRNA:   3'- agCACGGCUuuua----UAUUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 63231 0.66 0.999885
Target:  5'- -gGUGUCGGucgcucccGUGGGCAUCGCCg -3'
miRNA:   3'- agCACGGCUuuua----UAUUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 63276 0.66 0.999885
Target:  5'- -gGUGUCGGucgcucccGUGGGCAUCGCCg -3'
miRNA:   3'- agCACGGCUuuua----UAUUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 114958 0.66 0.999885
Target:  5'- -aGUGCUGAAGgcguaugcgGUGUAcGCAUCaCCCa -3'
miRNA:   3'- agCACGGCUUU---------UAUAUuUGUGGcGGG- -5'
3130 5' -46.5 NC_001493.1 + 11236 0.66 0.999951
Target:  5'- gUCGaGCCcucggucuGGGUGUGAGCGuCCGUCCc -3'
miRNA:   3'- -AGCaCGGcu------UUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 131464 0.66 0.999885
Target:  5'- aUCGUGaCCGAAGAg--GGACuccuggaucaGCCGUUCc -3'
miRNA:   3'- -AGCAC-GGCUUUUauaUUUG----------UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 94192 0.66 0.999865
Target:  5'- aCGUgGCCGAGGAuggguugcgggccauUAUuauGACAUUGUCCg -3'
miRNA:   3'- aGCA-CGGCUUUU---------------AUAu--UUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 32282 0.66 0.999951
Target:  5'- aUCGUGUacaCGAAc-----GGCACCGCCg -3'
miRNA:   3'- -AGCACG---GCUUuuauauUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 129998 0.66 0.999934
Target:  5'- cCGUGagguCCGGGAAgaaaguGGCACCcgcGCCCa -3'
miRNA:   3'- aGCAC----GGCUUUUauau--UUGUGG---CGGG- -5'
3130 5' -46.5 NC_001493.1 + 14444 0.66 0.999934
Target:  5'- cCGUGagguCCGGGAAgaaaguGGCACCcgcGCCCa -3'
miRNA:   3'- aGCAC----GGCUUUUauau--UUGUGG---CGGG- -5'
3130 5' -46.5 NC_001493.1 + 63782 0.66 0.999951
Target:  5'- gCGUcGCCGAugugGUGGuCACCGCg- -3'
miRNA:   3'- aGCA-CGGCUuuuaUAUUuGUGGCGgg -5'
3130 5' -46.5 NC_001493.1 + 44161 0.66 0.999902
Target:  5'- gUCG-GCgGAGGGUcucuaucaacAUACCGCCCa -3'
miRNA:   3'- -AGCaCGgCUUUUAuauu------UGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 35671 0.66 0.999951
Target:  5'- cUCGUGgaGAAGAc--GAGCGCCGCa- -3'
miRNA:   3'- -AGCACggCUUUUauaUUUGUGGCGgg -5'
3130 5' -46.5 NC_001493.1 + 35494 0.66 0.999951
Target:  5'- aCGcGCCGu--AUAUGcAACGCgGCCUc -3'
miRNA:   3'- aGCaCGGCuuuUAUAU-UUGUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 35412 0.66 0.999913
Target:  5'- gCGUGUCGggGAUcacuuCAUgGUCCa -3'
miRNA:   3'- aGCACGGCuuUUAuauuuGUGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.