miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 5' -46.5 NC_001493.1 + 3308 0.72 0.978148
Target:  5'- -aGUGUCGAcucugcgauGGAUGUGGACGCCgaGUCCg -3'
miRNA:   3'- agCACGGCU---------UUUAUAUUUGUGG--CGGG- -5'
3130 5' -46.5 NC_001493.1 + 5320 0.68 0.99881
Target:  5'- aCGUGgCGggGGcacccGUGGGCACCGUgaCCg -3'
miRNA:   3'- aGCACgGCuuUUa----UAUUUGUGGCG--GG- -5'
3130 5' -46.5 NC_001493.1 + 8331 0.7 0.994203
Target:  5'- uUCGgGCCGggGGgucgGAggcucggaacagGCGCCGUCCa -3'
miRNA:   3'- -AGCaCGGCuuUUaua-UU------------UGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 8689 1.16 0.009547
Target:  5'- gUCGUGCCGAAAAUAUAAACACCGCCCg -3'
miRNA:   3'- -AGCACGGCUUUUAUAUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 11236 0.66 0.999951
Target:  5'- gUCGaGCCcucggucuGGGUGUGAGCGuCCGUCCc -3'
miRNA:   3'- -AGCaCGGcu------UUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 11270 0.67 0.99975
Target:  5'- cUCG-GUCu-GAGUGUGAGCGuCCGUCCc -3'
miRNA:   3'- -AGCaCGGcuUUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 12364 0.71 0.990995
Target:  5'- gCGggGCgCGAugacuUGUAAACACCGCaCCu -3'
miRNA:   3'- aGCa-CG-GCUuuu--AUAUUUGUGGCG-GG- -5'
3130 5' -46.5 NC_001493.1 + 14444 0.66 0.999934
Target:  5'- cCGUGagguCCGGGAAgaaaguGGCACCcgcGCCCa -3'
miRNA:   3'- aGCAC----GGCUUUUauau--UUGUGG---CGGG- -5'
3130 5' -46.5 NC_001493.1 + 14840 0.68 0.999179
Target:  5'- gUCGUGCUGGAAGaccugcuCACgGCCg -3'
miRNA:   3'- -AGCACGGCUUUUauauuu-GUGgCGGg -5'
3130 5' -46.5 NC_001493.1 + 15226 0.74 0.959141
Target:  5'- gCGUGUgagauuCGAAAGUGUugcGAC-CCGCCCg -3'
miRNA:   3'- aGCACG------GCUUUUAUAu--UUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 15622 0.67 0.999597
Target:  5'- uUCGUcgcaGUCGcAGcaGUAGGCGCCGUCCc -3'
miRNA:   3'- -AGCA----CGGCuUUuaUAUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 15910 0.66 0.999885
Target:  5'- aUCGUGaCCGAAGAg--GGACuccuggaucaGCCGUUCc -3'
miRNA:   3'- -AGCAC-GGCUUUUauaUUUG----------UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 18192 0.71 0.990868
Target:  5'- gCGUGCCcauGGAGGUGUAcgcuuggGAgACgGCCCa -3'
miRNA:   3'- aGCACGG---CUUUUAUAU-------UUgUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 21261 0.67 0.999682
Target:  5'- -gGUGCCGAugucAUGGAC-CUGCUCc -3'
miRNA:   3'- agCACGGCUuuuaUAUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 22031 0.7 0.993256
Target:  5'- cCGUGUCGAGggagGAUGUGGAaaaACCGCg- -3'
miRNA:   3'- aGCACGGCUU----UUAUAUUUg--UGGCGgg -5'
3130 5' -46.5 NC_001493.1 + 25805 0.7 0.993256
Target:  5'- cCGUGCCGGAcgagAUGAACAuUCGUCg -3'
miRNA:   3'- aGCACGGCUUuua-UAUUUGU-GGCGGg -5'
3130 5' -46.5 NC_001493.1 + 26152 0.73 0.972739
Target:  5'- -gGUGCCGAGAAccaccgGUGAGCcUCGCUCu -3'
miRNA:   3'- agCACGGCUUUUa-----UAUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 26744 0.72 0.978148
Target:  5'- aCGUGCCGGAcggAUGAugAUgCGUCCa -3'
miRNA:   3'- aGCACGGCUUuuaUAUUugUG-GCGGG- -5'
3130 5' -46.5 NC_001493.1 + 27292 0.7 0.994203
Target:  5'- gCGUGcCCGggGucgcGUAUuc-CACCGCCg -3'
miRNA:   3'- aGCAC-GGCuuU----UAUAuuuGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 27681 0.72 0.980534
Target:  5'- gCGUGUaCGAGGAaagAGGCcgGCCGCCCg -3'
miRNA:   3'- aGCACG-GCUUUUauaUUUG--UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.