miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 5' -46.5 NC_001493.1 + 8689 1.16 0.009547
Target:  5'- gUCGUGCCGAAAAUAUAAACACCGCCCg -3'
miRNA:   3'- -AGCACGGCUUUUAUAUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 124243 1.16 0.009547
Target:  5'- gUCGUGCCGAAAAUAUAAACACCGCCCg -3'
miRNA:   3'- -AGCACGGCUUUUAUAUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 107028 0.75 0.929381
Target:  5'- cCGUGCCGAAAuagccuuuacccaGAACcgggGCCGCCCu -3'
miRNA:   3'- aGCACGGCUUUuaua---------UUUG----UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 33485 0.74 0.95084
Target:  5'- ---cGCCGAGuGUGUGAACaucACCGCCa -3'
miRNA:   3'- agcaCGGCUUuUAUAUUUG---UGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 15226 0.74 0.959141
Target:  5'- gCGUGUgagauuCGAAAGUGUugcGAC-CCGCCCg -3'
miRNA:   3'- aGCACG------GCUUUUAUAu--UUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 130780 0.74 0.959141
Target:  5'- gCGUGUgagauuCGAAAGUGUugcGAC-CCGCCCg -3'
miRNA:   3'- aGCACG------GCUUUUAUAu--UUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 29303 0.73 0.962907
Target:  5'- aCGgGCCGAAcgcggGGGCACgGCCCg -3'
miRNA:   3'- aGCaCGGCUUuuauaUUUGUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 26152 0.73 0.972739
Target:  5'- -gGUGCCGAGAAccaccgGUGAGCcUCGCUCu -3'
miRNA:   3'- agCACGGCUUUUa-----UAUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 86708 0.73 0.975553
Target:  5'- cCGUcuCCGGGAAUGUAGACACguuugagGCCCa -3'
miRNA:   3'- aGCAc-GGCUUUUAUAUUUGUGg------CGGG- -5'
3130 5' -46.5 NC_001493.1 + 44453 0.73 0.975553
Target:  5'- cUCGgGCCGGAGAUGguGGCACgGCUa -3'
miRNA:   3'- -AGCaCGGCUUUUAUauUUGUGgCGGg -5'
3130 5' -46.5 NC_001493.1 + 26744 0.72 0.978148
Target:  5'- aCGUGCCGGAcggAUGAugAUgCGUCCa -3'
miRNA:   3'- aGCACGGCUUuuaUAUUugUG-GCGGG- -5'
3130 5' -46.5 NC_001493.1 + 57369 0.72 0.978148
Target:  5'- cUG-GCCGAAAAUGgGAucgugcgguucACACCGUCCg -3'
miRNA:   3'- aGCaCGGCUUUUAUaUU-----------UGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 118862 0.72 0.978148
Target:  5'- -aGUGUCGAcucugcgauGGAUGUGGACGCCgaGUCCg -3'
miRNA:   3'- agCACGGCU---------UUUAUAUUUGUGG--CGGG- -5'
3130 5' -46.5 NC_001493.1 + 3308 0.72 0.978148
Target:  5'- -aGUGUCGAcucugcgauGGAUGUGGACGCCgaGUCCg -3'
miRNA:   3'- agCACGGCU---------UUUAUAUUUGUGG--CGGG- -5'
3130 5' -46.5 NC_001493.1 + 27681 0.72 0.980534
Target:  5'- gCGUGUaCGAGGAaagAGGCcgGCCGCCCg -3'
miRNA:   3'- aGCACG-GCUUUUauaUUUG--UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 93727 0.72 0.984715
Target:  5'- -gGUaGUCGAGucuGUGUAAGgcgauCACCGCCCg -3'
miRNA:   3'- agCA-CGGCUUu--UAUAUUU-----GUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 66718 0.72 0.985278
Target:  5'- cCGaGCCGAAAuucuccagauucugcUGGACAUCGCCCa -3'
miRNA:   3'- aGCaCGGCUUUuau------------AUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 133746 0.71 0.990868
Target:  5'- gCGUGCCcauGGAGGUGUAcgcuuggGAgACgGCCCa -3'
miRNA:   3'- aGCACGG---CUUUUAUAU-------UUgUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 18192 0.71 0.990868
Target:  5'- gCGUGCCcauGGAGGUGUAcgcuuggGAgACgGCCCa -3'
miRNA:   3'- aGCACGG---CUUUUAUAU-------UUgUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 127918 0.71 0.990995
Target:  5'- gCGggGCgCGAugacuUGUAAACACCGCaCCu -3'
miRNA:   3'- aGCa-CG-GCUuuu--AUAUUUGUGGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.