miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 5' -46.5 NC_001493.1 + 28145 0.69 0.998244
Target:  5'- uUCGUGuCCGcacacGUGuuCGCCGCCUc -3'
miRNA:   3'- -AGCAC-GGCuuuuaUAUuuGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 105978 0.7 0.995564
Target:  5'- gCGgGUCGGAAGUcacccgucaccuccAUGGGCACCuGCCCc -3'
miRNA:   3'- aGCaCGGCUUUUA--------------UAUUUGUGG-CGGG- -5'
3130 5' -46.5 NC_001493.1 + 53574 0.7 0.995635
Target:  5'- cUCGUGCaagcuauCGAAacGAUccauaucAUGGGCACCGCCg -3'
miRNA:   3'- -AGCACG-------GCUU--UUA-------UAUUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 62253 0.7 0.995774
Target:  5'- aUCGUucGCCGAGGGUucaacccGACA-CGCCCg -3'
miRNA:   3'- -AGCA--CGGCUUUUAuau----UUGUgGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 95434 0.7 0.996418
Target:  5'- aUCGUGgaacuggcacCCGAGGGUu----CACUGCCCg -3'
miRNA:   3'- -AGCAC----------GGCUUUUAuauuuGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 62194 0.69 0.996979
Target:  5'- cCGUGaCGGGAAUAuuuaaauguUAAugACCgGCCCg -3'
miRNA:   3'- aGCACgGCUUUUAU---------AUUugUGG-CGGG- -5'
3130 5' -46.5 NC_001493.1 + 113330 0.69 0.997465
Target:  5'- aUCGUGCCGGgucugcgcgucGAGUcgAGuguCCGUCCg -3'
miRNA:   3'- -AGCACGGCU-----------UUUAuaUUuguGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 28530 0.69 0.997884
Target:  5'- cCGUGUCGAccaGGGUGcgcuuCACaCGCCCg -3'
miRNA:   3'- aGCACGGCU---UUUAUauuu-GUG-GCGGG- -5'
3130 5' -46.5 NC_001493.1 + 106356 0.69 0.997884
Target:  5'- gCGUGCCGGGc-------CACCGCCa -3'
miRNA:   3'- aGCACGGCUUuuauauuuGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 27292 0.7 0.994203
Target:  5'- gCGUGcCCGggGucgcGUAUuc-CACCGCCg -3'
miRNA:   3'- aGCAC-GGCuuU----UAUAuuuGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 22031 0.7 0.993256
Target:  5'- cCGUGUCGAGggagGAUGUGGAaaaACCGCg- -3'
miRNA:   3'- aGCACGGCUU----UUAUAUUUg--UGGCGgg -5'
3130 5' -46.5 NC_001493.1 + 57369 0.72 0.978148
Target:  5'- cUG-GCCGAAAAUGgGAucgugcgguucACACCGUCCg -3'
miRNA:   3'- aGCaCGGCUUUUAUaUU-----------UGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 124243 1.16 0.009547
Target:  5'- gUCGUGCCGAAAAUAUAAACACCGCCCg -3'
miRNA:   3'- -AGCACGGCUUUUAUAUUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 107028 0.75 0.929381
Target:  5'- cCGUGCCGAAAuagccuuuacccaGAACcgggGCCGCCCu -3'
miRNA:   3'- aGCACGGCUUUuaua---------UUUG----UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 33485 0.74 0.95084
Target:  5'- ---cGCCGAGuGUGUGAACaucACCGCCa -3'
miRNA:   3'- agcaCGGCUUuUAUAUUUG---UGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 15226 0.74 0.959141
Target:  5'- gCGUGUgagauuCGAAAGUGUugcGAC-CCGCCCg -3'
miRNA:   3'- aGCACG------GCUUUUAUAu--UUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 130780 0.74 0.959141
Target:  5'- gCGUGUgagauuCGAAAGUGUugcGAC-CCGCCCg -3'
miRNA:   3'- aGCACG------GCUUUUAUAu--UUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 26152 0.73 0.972739
Target:  5'- -gGUGCCGAGAAccaccgGUGAGCcUCGCUCu -3'
miRNA:   3'- agCACGGCUUUUa-----UAUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 86708 0.73 0.975553
Target:  5'- cCGUcuCCGGGAAUGUAGACACguuugagGCCCa -3'
miRNA:   3'- aGCAc-GGCUUUUAUAUUUGUGg------CGGG- -5'
3130 5' -46.5 NC_001493.1 + 26744 0.72 0.978148
Target:  5'- aCGUGCCGGAcggAUGAugAUgCGUCCa -3'
miRNA:   3'- aGCACGGCUUuuaUAUUugUG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.