miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3131 3' -58.7 NC_001493.1 + 80389 0.66 0.812876
Target:  5'- gCCGCACgCCuUCGGGaucUCUCCCaCGAg -3'
miRNA:   3'- gGGUGUG-GGcGGUCCaa-AGAGGG-GCU- -5'
3131 3' -58.7 NC_001493.1 + 56790 0.66 0.804248
Target:  5'- uUCGCGCCCGCCucGGGcggaUCggugCCCaCGAg -3'
miRNA:   3'- gGGUGUGGGCGG--UCCaa--AGa---GGG-GCU- -5'
3131 3' -58.7 NC_001493.1 + 120951 0.66 0.798999
Target:  5'- cUCCGCucagacucagagacgACCCGCCAuucg-UUCCCCGAg -3'
miRNA:   3'- -GGGUG---------------UGGGCGGUccaaaGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 5397 0.66 0.798999
Target:  5'- cUCCGCucagacucagagacgACCCGCCAuucg-UUCCCCGAg -3'
miRNA:   3'- -GGGUG---------------UGGGCGGUccaaaGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 27618 0.66 0.79547
Target:  5'- aCCCGCGCggGCUcGGgaUCggCCCCGAu -3'
miRNA:   3'- -GGGUGUGggCGGuCCaaAGa-GGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 93669 0.66 0.79547
Target:  5'- gUCGCGCCCGCCGauUUaC-CCCCGGg -3'
miRNA:   3'- gGGUGUGGGCGGUccAAaGaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 93402 0.66 0.78655
Target:  5'- aCUCACACCCuGUCGGGgc-CUCCUgaUGAc -3'
miRNA:   3'- -GGGUGUGGG-CGGUCCaaaGAGGG--GCU- -5'
3131 3' -58.7 NC_001493.1 + 78623 0.66 0.785651
Target:  5'- gCUCACGCCCgGgCAGGUguguaguuccacuUUCUCauaCCGGg -3'
miRNA:   3'- -GGGUGUGGG-CgGUCCA-------------AAGAGg--GGCU- -5'
3131 3' -58.7 NC_001493.1 + 27768 0.66 0.768319
Target:  5'- uCCCGaGCCCGCgCGGG--UCcCCUCGAg -3'
miRNA:   3'- -GGGUgUGGGCG-GUCCaaAGaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 25709 0.67 0.762756
Target:  5'- aCCgcggACACCUGaaccggaucgagguuCCcGGUUUUUCCCCGAa -3'
miRNA:   3'- gGG----UGUGGGC---------------GGuCCAAAGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 115683 0.67 0.759025
Target:  5'- aCCACACCCacuuCCGGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 46514 0.67 0.759025
Target:  5'- aUCACGCCCGCgAuGGUggccaugcgcUCUCCgCGAu -3'
miRNA:   3'- gGGUGUGGGCGgU-CCAa---------AGAGGgGCU- -5'
3131 3' -58.7 NC_001493.1 + 128 0.67 0.759025
Target:  5'- aCCACACCCacuuCCGGGgcguaaCCCGAa -3'
miRNA:   3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 36384 0.67 0.759025
Target:  5'- cCCCACugagcaccCCCGCgCAGGccg--CCCCGGu -3'
miRNA:   3'- -GGGUGu-------GGGCG-GUCCaaagaGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 19462 0.67 0.754337
Target:  5'- cCCCGCACUacacucggagagcguCGCCAGucugacaaaauaCUCCCCGAc -3'
miRNA:   3'- -GGGUGUGG---------------GCGGUCcaaa--------GAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 4570 0.67 0.753396
Target:  5'- cCCCGaaagugUACCagGCCGGGUacgacgucuggacggUUCUCaCCCGAg -3'
miRNA:   3'- -GGGU------GUGGg-CGGUCCA---------------AAGAG-GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 120125 0.67 0.753396
Target:  5'- cCCCGaaagugUACCagGCCGGGUacgacgucuggacggUUCUCaCCCGAg -3'
miRNA:   3'- -GGGU------GUGGg-CGGUCCA---------------AAGAG-GGGCU- -5'
3131 3' -58.7 NC_001493.1 + 26236 0.67 0.749623
Target:  5'- aCCCGgGCCCGUCuGGgucga-CCCGAg -3'
miRNA:   3'- -GGGUgUGGGCGGuCCaaagagGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 51681 0.67 0.748676
Target:  5'- gCCCACccuCCUGCaCGugaaucuaacaucGGUgaccaUCUCCCCGAc -3'
miRNA:   3'- -GGGUGu--GGGCG-GU-------------CCAa----AGAGGGGCU- -5'
3131 3' -58.7 NC_001493.1 + 15067 0.67 0.730529
Target:  5'- gCCCGCACCCGCaccg---CUCCCUc- -3'
miRNA:   3'- -GGGUGUGGGCGguccaaaGAGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.