Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3136 | 5' | -62.2 | NC_001493.1 | + | 130984 | 0.66 | 0.682927 |
Target: 5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3' miRNA: 3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 36221 | 0.66 | 0.634615 |
Target: 5'- gGGCGgCCUGcg-CGGGGGUgCUCaguGGGGc -3' miRNA: 3'- -CCGCgGGGCcaaGCCCUCA-GAG---CCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 20457 | 0.66 | 0.644309 |
Target: 5'- cGGUGUCUccucguCGuGUUCGGGAGgguugCaggCGGGGg -3' miRNA: 3'- -CCGCGGG------GC-CAAGCCCUCa----Ga--GCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 10511 | 0.66 | 0.663664 |
Target: 5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3' miRNA: 3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 19170 | 0.66 | 0.673311 |
Target: 5'- cGgGCUCgCGGcgCGGGAGg--UGGGGa -3' miRNA: 3'- cCgCGGG-GCCaaGCCCUCagaGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 126843 | 0.66 | 0.663664 |
Target: 5'- --aGCCCUGGUccCGGGAGccCUCGGu- -3' miRNA: 3'- ccgCGGGGCCAa-GCCCUCa-GAGCCcc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 123995 | 0.66 | 0.632676 |
Target: 5'- uGGCGCCgcgCCGGggcucccacccaUCGGugcuggagcgcGGGUCUCaGGGGa -3' miRNA: 3'- -CCGCGG---GGCCa-----------AGCC-----------CUCAGAG-CCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 8441 | 0.66 | 0.632676 |
Target: 5'- uGGCGCCgcgCCGGggcucccacccaUCGGugcuggagcgcGGGUCUCaGGGGa -3' miRNA: 3'- -CCGCGG---GGCCa-----------AGCC-----------CUCAGAG-CCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 126065 | 0.66 | 0.663664 |
Target: 5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3' miRNA: 3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 11289 | 0.66 | 0.663664 |
Target: 5'- --aGCCCUGGUccCGGGAGccCUCGGu- -3' miRNA: 3'- ccgCGGGGCCAa-GCCCUCa-GAGCCcc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 15430 | 0.66 | 0.682927 |
Target: 5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3' miRNA: 3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 32552 | 0.67 | 0.58625 |
Target: 5'- aGGCuGgCCCGGgagaCGaagaaGGGGUCUCGGGc -3' miRNA: 3'- -CCG-CgGGGCCaa--GC-----CCUCAGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 5197 | 0.67 | 0.576642 |
Target: 5'- aGGCGCCUCuucUCGuGAggcgcGUCUCGGGGa -3' miRNA: 3'- -CCGCGGGGccaAGCcCU-----CAGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 116535 | 0.67 | 0.58625 |
Target: 5'- cGUGCgCCGGUcaguuugacaUUGGGGGcggaUCGGGGu -3' miRNA: 3'- cCGCGgGGCCA----------AGCCCUCag--AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 981 | 0.67 | 0.58625 |
Target: 5'- cGUGCgCCGGUcaguuugacaUUGGGGGcggaUCGGGGu -3' miRNA: 3'- cCGCGgGGCCA----------AGCCCUCag--AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 63950 | 0.68 | 0.548053 |
Target: 5'- gGGCGUCgCCGGUguggUCGGGGucuGUUUCGuGGu -3' miRNA: 3'- -CCGCGG-GGCCA----AGCCCU---CAGAGC-CCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 128851 | 0.68 | 0.529241 |
Target: 5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3' miRNA: 3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 13297 | 0.68 | 0.529241 |
Target: 5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3' miRNA: 3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 130456 | 0.69 | 0.456747 |
Target: 5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3' miRNA: 3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 14902 | 0.69 | 0.456747 |
Target: 5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3' miRNA: 3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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