miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 5' -62.2 NC_001493.1 + 981 0.67 0.58625
Target:  5'- cGUGCgCCGGUcaguuugacaUUGGGGGcggaUCGGGGu -3'
miRNA:   3'- cCGCGgGGCCA----------AGCCCUCag--AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 5197 0.67 0.576642
Target:  5'- aGGCGCCUCuucUCGuGAggcgcGUCUCGGGGa -3'
miRNA:   3'- -CCGCGGGGccaAGCcCU-----CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 5315 0.69 0.465528
Target:  5'- cGGCugcacgcucgGCCCCGGUgacCGGGGGgCUgGcGGGu -3'
miRNA:   3'- -CCG----------CGGGGCCAa--GCCCUCaGAgC-CCC- -5'
3136 5' -62.2 NC_001493.1 + 7835 0.7 0.414237
Target:  5'- gGGUuCCCCGGg--GGGAGgguuaaUCGGGGa -3'
miRNA:   3'- -CCGcGGGGCCaagCCCUCag----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 8441 0.66 0.632676
Target:  5'- uGGCGCCgcgCCGGggcucccacccaUCGGugcuggagcgcGGGUCUCaGGGGa -3'
miRNA:   3'- -CCGCGG---GGCCa-----------AGCC-----------CUCAGAG-CCCC- -5'
3136 5' -62.2 NC_001493.1 + 10511 0.66 0.663664
Target:  5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3'
miRNA:   3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 11289 0.66 0.663664
Target:  5'- --aGCCCUGGUccCGGGAGccCUCGGu- -3'
miRNA:   3'- ccgCGGGGCCAa-GCCCUCa-GAGCCcc -5'
3136 5' -62.2 NC_001493.1 + 12684 0.74 0.237896
Target:  5'- aGCGCCCCGaccccggacgcgaccCGGGAGUCUcccaCGGGGg -3'
miRNA:   3'- cCGCGGGGCcaa------------GCCCUCAGA----GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 12837 0.7 0.422545
Target:  5'- cGCGUCCgGGgUCGGGGcgCUCGGGa -3'
miRNA:   3'- cCGCGGGgCCaAGCCCUcaGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 12920 0.72 0.318667
Target:  5'- -cCGUCCCGGgaagguucgggagUGGGGGUCUCGGuGGa -3'
miRNA:   3'- ccGCGGGGCCaa-----------GCCCUCAGAGCC-CC- -5'
3136 5' -62.2 NC_001493.1 + 13297 0.68 0.529241
Target:  5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3'
miRNA:   3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 13305 0.72 0.318667
Target:  5'- cGGCGCUCCGGUcucgcUCcggucuuauagaccgGGGcuccAGUCUCGGGa -3'
miRNA:   3'- -CCGCGGGGCCA-----AG---------------CCC----UCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 13733 0.72 0.31592
Target:  5'- --aGCCUCGGgaCGGGucGGUCUCGGGc -3'
miRNA:   3'- ccgCGGGGCCaaGCCC--UCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 14902 0.69 0.456747
Target:  5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3'
miRNA:   3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5'
3136 5' -62.2 NC_001493.1 + 15113 1.1 0.000755
Target:  5'- uGGCGCCCCGGUUCGGGAGUCUCGGGGc -3'
miRNA:   3'- -CCGCGGGGCCAAGCCCUCAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 15430 0.66 0.682927
Target:  5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3'
miRNA:   3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 18146 0.72 0.354515
Target:  5'- cGCgGCCCCGaaacugaucgagUGGGAgGUCUCGGGGa -3'
miRNA:   3'- cCG-CGGGGCcaa---------GCCCU-CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 19170 0.66 0.673311
Target:  5'- cGgGCUCgCGGcgCGGGAGg--UGGGGa -3'
miRNA:   3'- cCgCGGG-GCCaaGCCCUCagaGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 20457 0.66 0.644309
Target:  5'- cGGUGUCUccucguCGuGUUCGGGAGgguugCaggCGGGGg -3'
miRNA:   3'- -CCGCGGG------GC-CAAGCCCUCa----Ga--GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 25613 0.71 0.389928
Target:  5'- aGGCGCCCgucuuuuuCGGgaCaGGAGgUUCGGGGg -3'
miRNA:   3'- -CCGCGGG--------GCCaaGcCCUCaGAGCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.