miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 5' -62.2 NC_001493.1 + 130984 0.66 0.682927
Target:  5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3'
miRNA:   3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 63950 0.68 0.548053
Target:  5'- gGGCGUCgCCGGUguggUCGGGGucuGUUUCGuGGu -3'
miRNA:   3'- -CCGCGG-GGCCA----AGCCCU---CAGAGC-CCc -5'
3136 5' -62.2 NC_001493.1 + 5197 0.67 0.576642
Target:  5'- aGGCGCCUCuucUCGuGAggcgcGUCUCGGGGa -3'
miRNA:   3'- -CCGCGGGGccaAGCcCU-----CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 32552 0.67 0.58625
Target:  5'- aGGCuGgCCCGGgagaCGaagaaGGGGUCUCGGGc -3'
miRNA:   3'- -CCG-CgGGGCCaa--GC-----CCUCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 36221 0.66 0.634615
Target:  5'- gGGCGgCCUGcg-CGGGGGUgCUCaguGGGGc -3'
miRNA:   3'- -CCGCgGGGCcaaGCCCUCA-GAG---CCCC- -5'
3136 5' -62.2 NC_001493.1 + 20457 0.66 0.644309
Target:  5'- cGGUGUCUccucguCGuGUUCGGGAGgguugCaggCGGGGg -3'
miRNA:   3'- -CCGCGGG------GC-CAAGCCCUCa----Ga--GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 10511 0.66 0.663664
Target:  5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3'
miRNA:   3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 126065 0.66 0.663664
Target:  5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3'
miRNA:   3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 15430 0.66 0.682927
Target:  5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3'
miRNA:   3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 128851 0.68 0.529241
Target:  5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3'
miRNA:   3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 13297 0.68 0.529241
Target:  5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3'
miRNA:   3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 130456 0.69 0.456747
Target:  5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3'
miRNA:   3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5'
3136 5' -62.2 NC_001493.1 + 130668 1.1 0.000755
Target:  5'- uGGCGCCCCGGUUCGGGAGUCUCGGGGc -3'
miRNA:   3'- -CCGCGGGGCCAAGCCCUCAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 12684 0.74 0.237896
Target:  5'- aGCGCCCCGaccccggacgcgaccCGGGAGUCUcccaCGGGGg -3'
miRNA:   3'- cCGCGGGGCcaa------------GCCCUCAGA----GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 128238 0.74 0.237896
Target:  5'- aGCGCCCCGaccccggacgcgaccCGGGAGUCUcccaCGGGGg -3'
miRNA:   3'- cCGCGGGGCcaa------------GCCCUCAGA----GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 46097 0.72 0.344197
Target:  5'- aGGCGCCUCG---UGGaGAGUCaggUCGGGGg -3'
miRNA:   3'- -CCGCGGGGCcaaGCC-CUCAG---AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 87791 0.7 0.406031
Target:  5'- -aCGCCCCGGg--GGGcaGGUCcCGGGGu -3'
miRNA:   3'- ccGCGGGGCCaagCCC--UCAGaGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 64264 0.7 0.439456
Target:  5'- cGGUcuccgGCCCgGGggUGGGAGUCUCGuuGGu -3'
miRNA:   3'- -CCG-----CGGGgCCaaGCCCUCAGAGCc-CC- -5'
3136 5' -62.2 NC_001493.1 + 120752 0.7 0.448055
Target:  5'- aGGCGCCCUucucGUgaGGcGcGUCUCGGGGa -3'
miRNA:   3'- -CCGCGGGGc---CAagCC-CuCAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 14902 0.69 0.456747
Target:  5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3'
miRNA:   3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.