Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3136 | 5' | -62.2 | NC_001493.1 | + | 15113 | 1.1 | 0.000755 |
Target: 5'- uGGCGCCCCGGUUCGGGAGUCUCGGGGc -3' miRNA: 3'- -CCGCGGGGCCAAGCCCUCAGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 130668 | 1.1 | 0.000755 |
Target: 5'- uGGCGCCCCGGUUCGGGAGUCUCGGGGc -3' miRNA: 3'- -CCGCGGGGCCAAGCCCUCAGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 12684 | 0.74 | 0.237896 |
Target: 5'- aGCGCCCCGaccccggacgcgaccCGGGAGUCUcccaCGGGGg -3' miRNA: 3'- cCGCGGGGCcaa------------GCCCUCAGA----GCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 128238 | 0.74 | 0.237896 |
Target: 5'- aGCGCCCCGaccccggacgcgaccCGGGAGUCUcccaCGGGGg -3' miRNA: 3'- cCGCGGGGCcaa------------GCCCUCAGA----GCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 30492 | 0.74 | 0.247325 |
Target: 5'- cGGgGCCCUGG-UCGGGGGgaUCGGGu -3' miRNA: 3'- -CCgCGGGGCCaAGCCCUCagAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 13733 | 0.72 | 0.31592 |
Target: 5'- --aGCCUCGGgaCGGGucGGUCUCGGGc -3' miRNA: 3'- ccgCGGGGCCaaGCCC--UCAGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 129287 | 0.72 | 0.31592 |
Target: 5'- --aGCCUCGGgaCGGGucGGUCUCGGGc -3' miRNA: 3'- ccgCGGGGCCaaGCCC--UCAGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 12920 | 0.72 | 0.318667 |
Target: 5'- -cCGUCCCGGgaagguucgggagUGGGGGUCUCGGuGGa -3' miRNA: 3'- ccGCGGGGCCaa-----------GCCCUCAGAGCC-CC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 128859 | 0.72 | 0.318667 |
Target: 5'- cGGCGCUCCGGUcucgcUCcggucuuauagaccgGGGcuccAGUCUCGGGa -3' miRNA: 3'- -CCGCGGGGCCA-----AG---------------CCC----UCAGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 128474 | 0.72 | 0.318667 |
Target: 5'- -cCGUCCCGGgaagguucgggagUGGGGGUCUCGGuGGa -3' miRNA: 3'- ccGCGGGGCCaa-----------GCCCUCAGAGCC-CC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 13305 | 0.72 | 0.318667 |
Target: 5'- cGGCGCUCCGGUcucgcUCcggucuuauagaccgGGGcuccAGUCUCGGGa -3' miRNA: 3'- -CCGCGGGGCCA-----AG---------------CCC----UCAGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 46097 | 0.72 | 0.344197 |
Target: 5'- aGGCGCCUCG---UGGaGAGUCaggUCGGGGg -3' miRNA: 3'- -CCGCGGGGCcaaGCC-CUCAG---AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 18146 | 0.72 | 0.354515 |
Target: 5'- cGCgGCCCCGaaacugaucgagUGGGAgGUCUCGGGGa -3' miRNA: 3'- cCG-CGGGGCcaa---------GCCCU-CAGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 133700 | 0.72 | 0.354515 |
Target: 5'- cGCgGCCCCGaaacugaucgagUGGGAgGUCUCGGGGa -3' miRNA: 3'- cCG-CGGGGCcaa---------GCCCU-CAGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 25613 | 0.71 | 0.389928 |
Target: 5'- aGGCGCCCgucuuuuuCGGgaCaGGAGgUUCGGGGg -3' miRNA: 3'- -CCGCGGG--------GCCaaGcCCUCaGAGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 87791 | 0.7 | 0.406031 |
Target: 5'- -aCGCCCCGGg--GGGcaGGUCcCGGGGu -3' miRNA: 3'- ccGCGGGGCCaagCCC--UCAGaGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 123389 | 0.7 | 0.414237 |
Target: 5'- gGGUuCCCCGGg--GGGAGgguuaaUCGGGGa -3' miRNA: 3'- -CCGcGGGGCCaagCCCUCag----AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 7835 | 0.7 | 0.414237 |
Target: 5'- gGGUuCCCCGGg--GGGAGgguuaaUCGGGGa -3' miRNA: 3'- -CCGcGGGGCCaagCCCUCag----AGCCCC- -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 128391 | 0.7 | 0.422545 |
Target: 5'- cGCGUCCgGGgUCGGGGcgCUCGGGa -3' miRNA: 3'- cCGCGGGgCCaAGCCCUcaGAGCCCc -5' |
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3136 | 5' | -62.2 | NC_001493.1 | + | 12837 | 0.7 | 0.422545 |
Target: 5'- cGCGUCCgGGgUCGGGGcgCUCGGGa -3' miRNA: 3'- cCGCGGGgCCaAGCCCUcaGAGCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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