miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31378 5' -61.8 NC_006623.1 + 146756 0.66 0.688636
Target:  5'- cGCGGucccgaauCGGgagGCGCUggcGGCCGCGccgcuuuccaccuccGGCGCg -3'
miRNA:   3'- -CGCU--------GCCg--CGCGAa--UCGGCGC---------------CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 114855 0.66 0.688636
Target:  5'- cGCGGucccgaauCGGgagGCGCUggcGGCCGCGccgcuuuccaccuccGGCGCg -3'
miRNA:   3'- -CGCU--------GCCg--CGCGAa--UCGGCGC---------------CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 108979 0.66 0.684764
Target:  5'- uCGugGGUGCGacgGGUCGUGcGGCa- -3'
miRNA:   3'- cGCugCCGCGCgaaUCGGCGC-CCGcg -5'
31378 5' -61.8 NC_006623.1 + 76796 0.66 0.675057
Target:  5'- uUGugGGUGgGUUacUAGuuGCuugcuuGGGCGCa -3'
miRNA:   3'- cGCugCCGCgCGA--AUCggCG------CCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 139302 0.66 0.655554
Target:  5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3'
miRNA:   3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5'
31378 5' -61.8 NC_006623.1 + 2131 0.66 0.655554
Target:  5'- uCGACGGCGgGCUUcccAGCgGCcGGUa- -3'
miRNA:   3'- cGCUGCCGCgCGAA---UCGgCGcCCGcg -5'
31378 5' -61.8 NC_006623.1 + 148597 0.66 0.655554
Target:  5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3'
miRNA:   3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5'
31378 5' -61.8 NC_006623.1 + 113015 0.66 0.655554
Target:  5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3'
miRNA:   3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5'
31378 5' -61.8 NC_006623.1 + 122310 0.66 0.655554
Target:  5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3'
miRNA:   3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5'
31378 5' -61.8 NC_006623.1 + 116691 0.66 0.645773
Target:  5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3'
miRNA:   3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5'
31378 5' -61.8 NC_006623.1 + 144921 0.66 0.645773
Target:  5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3'
miRNA:   3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5'
31378 5' -61.8 NC_006623.1 + 138840 0.66 0.645773
Target:  5'- uGCGAgGGacgcuggaauCGCGCUggcGCUgGCGcGGCGCc -3'
miRNA:   3'- -CGCUgCC----------GCGCGAau-CGG-CGC-CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 122771 0.66 0.645773
Target:  5'- uGCGAgGGacgcuggaauCGCGCUggcGCUgGCGcGGCGCc -3'
miRNA:   3'- -CGCUgCC----------GCGCGAau-CGG-CGC-CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 139580 0.66 0.635982
Target:  5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3'
miRNA:   3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 122032 0.66 0.635982
Target:  5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3'
miRNA:   3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 491 0.67 0.626188
Target:  5'- uGUGGCugcuGUGCGCU--GCCGCGcuuuuaauGGCGCu -3'
miRNA:   3'- -CGCUGc---CGCGCGAauCGGCGC--------CCGCG- -5'
31378 5' -61.8 NC_006623.1 + 106400 0.67 0.626188
Target:  5'- --aAUGGCGUGUUgacuuaCGUGGGCGCg -3'
miRNA:   3'- cgcUGCCGCGCGAaucg--GCGCCCGCG- -5'
31378 5' -61.8 NC_006623.1 + 137284 0.67 0.60662
Target:  5'- uCGGCGGC-CGCUgccggaauagUGGCC-UGGGcCGCg -3'
miRNA:   3'- cGCUGCCGcGCGA----------AUCGGcGCCC-GCG- -5'
31378 5' -61.8 NC_006623.1 + 46013 0.67 0.60662
Target:  5'- aUGGgGGUGCGCcggAGCCcgGCGaGCGCg -3'
miRNA:   3'- cGCUgCCGCGCGaa-UCGG--CGCcCGCG- -5'
31378 5' -61.8 NC_006623.1 + 128283 0.67 0.60369
Target:  5'- cGCGACGcuuaaccucaguucGCGCGC----CCGUaccGGGCGCa -3'
miRNA:   3'- -CGCUGC--------------CGCGCGaaucGGCG---CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.