Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31632 | 5' | -69.7 | NC_006879.1 | + | 8223 | 0.66 | 0.118489 |
Target: 5'- aCCUCaaCCGCCG-CGUCGUCgCCCACg -3' miRNA: 3'- -GGGGgcGGCGGUgGCGGCGGgGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 7808 | 0.66 | 0.109474 |
Target: 5'- gUCgUCGUCcCCACCGUCGUCCaCCCAg -3' miRNA: 3'- -GGgGGCGGcGGUGGCGGCGGG-GGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 17469 | 0.67 | 0.100837 |
Target: 5'- aCUgUCGCCGCgAgCGCCGCUuucaagauggccaCCCCAUc -3' miRNA: 3'- -GGgGGCGGCGgUgGCGGCGG-------------GGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11383 | 0.67 | 0.098452 |
Target: 5'- gCCCCGuCCGCCgGCCGCUGCaUCUaaaACa -3' miRNA: 3'- gGGGGC-GGCGG-UGGCGGCGgGGGg--UG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 23823 | 0.67 | 0.095865 |
Target: 5'- uCCCCCucuccuaCCGCgAgUGCCcUCCCCCACu -3' miRNA: 3'- -GGGGGc------GGCGgUgGCGGcGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 24610 | 0.67 | 0.095865 |
Target: 5'- gCCCCGgC-CC-CCGaCGCCCCCgGCc -3' miRNA: 3'- gGGGGCgGcGGuGGCgGCGGGGGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 4826 | 0.67 | 0.093342 |
Target: 5'- aCCCUCGCgGCC-CUGgaCGCCCaCCgGCu -3' miRNA: 3'- -GGGGGCGgCGGuGGCg-GCGGG-GGgUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8359 | 0.67 | 0.093342 |
Target: 5'- uUCCUCGCggagGUCGCCGUgGCCCgCUCGCu -3' miRNA: 3'- -GGGGGCGg---CGGUGGCGgCGGG-GGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 5830 | 0.67 | 0.091859 |
Target: 5'- aCCCUGCgCuCCAUCGCCaaguugcuuuccaacGCCCUCUACg -3' miRNA: 3'- gGGGGCG-GcGGUGGCGG---------------CGGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 10467 | 0.67 | 0.090883 |
Target: 5'- uCCUCCGCCuCCugACCGCUGCggUCCCUAa -3' miRNA: 3'- -GGGGGCGGcGG--UGGCGGCG--GGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 5941 | 0.67 | 0.088485 |
Target: 5'- aUCCUGCCcgacgaGCgCACCGCCGUguUCCCCGa -3' miRNA: 3'- gGGGGCGG------CG-GUGGCGGCG--GGGGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 11143 | 0.67 | 0.088485 |
Target: 5'- gCUCCCGCCgGCgGCUGgCGCUCaCCGCc -3' miRNA: 3'- -GGGGGCGG-CGgUGGCgGCGGGgGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 14946 | 0.67 | 0.086147 |
Target: 5'- aCgUCGCC-CCACCGCCGCCaUgCUGCa -3' miRNA: 3'- gGgGGCGGcGGUGGCGGCGG-GgGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 15078 | 0.68 | 0.083868 |
Target: 5'- gCUgCUGCCGCCAUCGCUagcaugGCCagaCCCAg -3' miRNA: 3'- -GGgGGCGGCGGUGGCGG------CGGg--GGGUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8913 | 0.68 | 0.083868 |
Target: 5'- gUCCCCGUCGCagaGCUGCCggaggaacccguGCCCCUgGa -3' miRNA: 3'- -GGGGGCGGCGg--UGGCGG------------CGGGGGgUg -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 6089 | 0.68 | 0.083868 |
Target: 5'- cCCCCCGcCCGCCAacUUGCUagaUCCCCUGCc -3' miRNA: 3'- -GGGGGC-GGCGGU--GGCGGc--GGGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 10071 | 0.68 | 0.077371 |
Target: 5'- -aUCCGCCGCUcCCGaugCGCCuggCCCCGCa -3' miRNA: 3'- ggGGGCGGCGGuGGCg--GCGG---GGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 8442 | 0.68 | 0.07613 |
Target: 5'- aCCUgGCCGCCACCGUggagcgagcgggccaCGgcgaCCUCCGCg -3' miRNA: 3'- gGGGgCGGCGGUGGCG---------------GCg---GGGGGUG- -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 14840 | 0.68 | 0.071357 |
Target: 5'- aCCCCggaccgGUCGCUAgCGCCGCCUCCa-- -3' miRNA: 3'- gGGGG------CGGCGGUgGCGGCGGGGGgug -5' |
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31632 | 5' | -69.7 | NC_006879.1 | + | 22069 | 0.69 | 0.069454 |
Target: 5'- gCCCUCGCCgGCC-CCGaCGUCCUUCAUg -3' miRNA: 3'- -GGGGGCGG-CGGuGGCgGCGGGGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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