miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 3' -55.5 NC_006883.1 + 28411 0.66 0.97881
Target:  5'- aCCUGgAGGACCuGgAGGACCAc---- -3'
miRNA:   3'- -GGGCaUCCUGGuCgUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 27278 0.66 0.97881
Target:  5'- uCCUccAGGuCCAGguGGuCCAGgUGGu -3'
miRNA:   3'- -GGGcaUCCuGGUCguCCuGGUCaACC- -5'
31657 3' -55.5 NC_006883.1 + 210952 0.66 0.973602
Target:  5'- gUCUGgauGACCAGaaucuacaaguGGACCAGUUGGc -3'
miRNA:   3'- -GGGCaucCUGGUCgu---------CCUGGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 24948 0.67 0.968696
Target:  5'- aCCUGUAGGACCuGgAGGAgCAa---- -3'
miRNA:   3'- -GGGCAUCCUGGuCgUCCUgGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 22171 0.68 0.939078
Target:  5'- aCCUGgaggaccaccacUAGGACCuGgAGGACCAGgUGa -3'
miRNA:   3'- -GGGC------------AUCCUGGuCgUCCUGGUCaACc -5'
31657 3' -55.5 NC_006883.1 + 22096 0.68 0.939078
Target:  5'- aCCUGgAGGACCAcUuGGACCAGgaGGn -3'
miRNA:   3'- -GGGCaUCCUGGUcGuCCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 27656 0.68 0.939078
Target:  5'- aCCUGgAGGACCuGCuGGACC---UGGa -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGucaACC- -5'
31657 3' -55.5 NC_006883.1 + 27539 0.68 0.929543
Target:  5'- aCCUGgAGGACCAucuccaccuGUAGGACCuGaUGGn -3'
miRNA:   3'- -GGGCaUCCUGGU---------CGUCCUGGuCaACC- -5'
31657 3' -55.5 NC_006883.1 + 81989 0.69 0.924446
Target:  5'- aUCCGUAGGcAUgAGCAGcACCAGUa-- -3'
miRNA:   3'- -GGGCAUCC-UGgUCGUCcUGGUCAacc -5'
31657 3' -55.5 NC_006883.1 + 26979 0.69 0.924446
Target:  5'- aCCUGgAGaACCAGCAGGACCuugUGa -3'
miRNA:   3'- -GGGCaUCcUGGUCGUCCUGGucaACc -5'
31657 3' -55.5 NC_006883.1 + 26767 0.69 0.919129
Target:  5'- aCCUGcAGGACCaguugcaccAGCAGGACCAu---- -3'
miRNA:   3'- -GGGCaUCCUGG---------UCGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 21925 0.69 0.913593
Target:  5'- aCCUGUuGGACCAGCAucaccuugcGGACCuugcGGa -3'
miRNA:   3'- -GGGCAuCCUGGUCGU---------CCUGGucaaCC- -5'
31657 3' -55.5 NC_006883.1 + 87665 0.69 0.910166
Target:  5'- aCCCGUugcuGGAUCauauguuguagcauuAGUAGGAguuccaacaacuCCAGUUGGg -3'
miRNA:   3'- -GGGCAu---CCUGG---------------UCGUCCU------------GGUCAACC- -5'
31657 3' -55.5 NC_006883.1 + 223061 0.69 0.907838
Target:  5'- aCCUGgAGGACCAaCAGGACCAc---- -3'
miRNA:   3'- -GGGCaUCCUGGUcGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 27584 0.7 0.889284
Target:  5'- aCCUGgAGGACCuGCuGGACCuGUgccaccaccUGGa -3'
miRNA:   3'- -GGGCaUCCUGGuCGuCCUGGuCA---------ACC- -5'
31657 3' -55.5 NC_006883.1 + 28274 0.7 0.868859
Target:  5'- uUCCGccuGGACCAGUuGGACCuGgaGGa -3'
miRNA:   3'- -GGGCau-CCUGGUCGuCCUGGuCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 28507 0.71 0.838916
Target:  5'- aCCaGUcGGACCAGUuccaccuGGACCAGgaGGa -3'
miRNA:   3'- gGG-CAuCCUGGUCGu------CCUGGUCaaCC- -5'
31657 3' -55.5 NC_006883.1 + 222995 0.71 0.814624
Target:  5'- aCC--AGGcgaACCAGCAGGACCAGgugaaccuugUGGa -3'
miRNA:   3'- gGGcaUCC---UGGUCGUCCUGGUCa---------ACC- -5'
31657 3' -55.5 NC_006883.1 + 22132 0.72 0.780137
Target:  5'- aCCacuuGGACCAGCAGGACCAu---- -3'
miRNA:   3'- -GGgcauCCUGGUCGUCCUGGUcaacc -5'
31657 3' -55.5 NC_006883.1 + 25002 0.74 0.686514
Target:  5'- aCCUGgAGGACCGcUAGGACCAcUUGGa -3'
miRNA:   3'- -GGGCaUCCUGGUcGUCCUGGUcAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.